View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20764_low_61 (Length: 283)
Name: NF20764_low_61
Description: NF20764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20764_low_61 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 139 - 283
Target Start/End: Original strand, 32847745 - 32847889
Alignment:
| Q |
139 |
catcacacacctattttatattggcattcatttagacctaaataaactaaaccacattatctgattcaacacgcatagtttcagtcataatagtaccaaa |
238 |
Q |
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| T |
32847745 |
catcacactcctattttatattggcattcatttagatctaaataaactaaaccacattatctgattcaacacgcatagtttcagtcataatagtaccaaa |
32847844 |
T |
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| Q |
239 |
atgacacaaacaaggtccccaccagcagaacctaaagaatataat |
283 |
Q |
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| T |
32847845 |
atgacacaaacaaggtccccaccggcagaacctaaagaatataat |
32847889 |
T |
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Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 73 - 122
Target Start/End: Original strand, 32847517 - 32847566
Alignment:
| Q |
73 |
gtctgaatatgagtaagctttatcatattcctaatcatacagaccgatat |
122 |
Q |
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| T |
32847517 |
gtctgaatatgagtaagctttatcatattcctaatcatacaaaccgatat |
32847566 |
T |
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