View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20764_low_63 (Length: 277)

Name: NF20764_low_63
Description: NF20764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20764_low_63
NF20764_low_63
[»] chr8 (4 HSPs)
chr8 (12-119)||(32848022-32848129)
chr8 (175-277)||(32847923-32848025)
chr8 (32-211)||(11364555-11364737)
chr8 (18-182)||(9617871-9618043)
[»] chr7 (7 HSPs)
chr7 (30-198)||(29367291-29367463)
chr7 (28-177)||(32471143-32471301)
chr7 (34-215)||(42863670-42863854)
chr7 (127-182)||(29346783-29346838)
chr7 (15-99)||(35199381-35199465)
chr7 (137-215)||(3756740-3756816)
chr7 (137-180)||(39773360-39773403)
[»] chr5 (1 HSPs)
chr5 (28-215)||(34272322-34272511)
[»] chr3 (5 HSPs)
chr3 (16-125)||(531157-531268)
chr3 (16-125)||(564112-564223)
chr3 (155-211)||(564224-564280)
chr3 (155-211)||(531269-531325)
chr3 (28-121)||(46505965-46506057)
[»] chr1 (3 HSPs)
chr1 (68-198)||(29274555-29274690)
chr1 (30-100)||(49138139-49138208)
chr1 (137-180)||(12900877-12900920)
[»] chr6 (2 HSPs)
chr6 (12-213)||(29181546-29181753)
chr6 (75-125)||(15091898-15091948)
[»] chr4 (3 HSPs)
chr4 (35-181)||(4848782-4848930)
chr4 (28-108)||(45610619-45610699)
chr4 (137-179)||(49272661-49272703)


Alignment Details
Target: chr8 (Bit Score: 92; Significance: 9e-45; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 12 - 119
Target Start/End: Complemental strand, 32848129 - 32848022
Alignment:
Q  12 atgaacatgtggctcatgatcctaaaatcaaggaagttttgattgtgcataaatagagaattgatgatcaataatgggtatgaagaaaactgatgaactc 111  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||    
T  32848129 atgaacatgtggctcatgatcctaaaatcaaggaagtttggattgtgcataaatagagaaatgatgatcaataatgggtatcaagaaaattgatgaactc 32848030  T
Q  112 tctcatct 119  Q
    ||||||||    
T  32848029 tctcatct 32848022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 175 - 277
Target Start/End: Complemental strand, 32848025 - 32847923
Alignment:
Q  175 atcttttcctatctcttttatgtattaagaacaccaactctcatctatcaatttaggttcttccgcttatgaatcttttccaagaaaaccgtgtatcctt 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||| ||||| ||| |    
T  32848025 atcttttcctatctcttttatgtattaagaacaccaactctcatctatcaatttcggttctcccgcttatgaatctttttcaagaaaaacgtgtctccct 32847926  T
Q  275 ttt 277  Q
    |||    
T  32847925 ttt 32847923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 32 - 211
Target Start/End: Complemental strand, 11364737 - 11364555
Alignment:
Q  32 cctaaaatcaaggaagttttgattgtgcataaatagagaattgatgatcaataatgggtatgaagaaaactgatgaactctctcatctctccctc---ac 128  Q
    |||||||| ||||||| || |||||||||||||||||||| ||||||||| ||| |||||||||||||| |||   | | |||| |||| || |    ||    
T  11364737 cctaaaattaaggaagcttggattgtgcataaatagagaaatgatgatcactaaggggtatgaagaaaaatgacatagtatctcctctcccctttggtac 11364638  T
Q  129 tctcttgaagagtaatggcttaagtctttggacttagtcttcttctatcttttcctatctcttttatgtattaagaacaccaa 211  Q
    ||||  | ||||||||||||||||||||| ||||| |||||||||||||||||||| || |||||||||| ||||||||||||    
T  11364637 tctcaagtagagtaatggcttaagtctttcgacttggtcttcttctatcttttcctttcccttttatgtactaagaacaccaa 11364555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 9618043 - 9617871
Alignment:
Q  18 atgtggctcatgatcctaaaatcaaggaagttttgattgtgcataaatagagaattgatgatcaataatgggtatgaagaaaactgatgaactctctcat 117  Q
    ||||||||  |||||||| |||||| ||||||| ||||||||||||| ||  ||  ||||| ||| |||  |||||||||||| ||| ||| ||| || |    
T  9618043 atgtggctagtgatcctagaatcaatgaagtttggattgtgcataaacaggaaaaggatgaacaacaataagtatgaagaaaaatgaagaagtctttcct 9617944  T
Q  118 ctctccctc----actctcttgaa----gagtaatggcttaagtctttggacttagtcttcttctatcttttc 182  Q
    |||| |||     ||||||| | |    |||||||| ||||||| |||| | |||||||||||||||||||||    
T  9617943 ctcttcctgtggtactctctagtatagggagtaatgacttaagtttttgtatttagtcttcttctatcttttc 9617871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 198
Target Start/End: Complemental strand, 29367463 - 29367291
Alignment:
Q  30 atcctaaaatcaaggaagttttgattgtgcataaatagagaattgatgatcaataatgggtatgaagaaaactgatgaactctctcatctctccctc--- 126  Q
    |||||||||| || ||| ||| | || | ||||||||| ||| |||||||||| | ||||||||||||||| ||||||| ||| ||||||||| ||        
T  29367463 atcctaaaattaaagaactttgggttatacataaatagtgaaatgatgatcaacagtgggtatgaagaaaagtgatgaagtctatcatctctctctttaa 29367364  T
Q  127 -actctcttgaagagtaatggcttaagtctttggacttagtcttcttctatcttttcctatctcttttatgta 198  Q
     ||||||| | ||||||||| |||||||||| |||||||||||||||||||| ||  || |||||||||||||    
T  29367363 tactctctagtagagtaatgacttaagtcttaggacttagtcttcttctatccttctctttctcttttatgta 29367291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 28 - 177
Target Start/End: Complemental strand, 32471301 - 32471143
Alignment:
Q  28 tgatcctaaaatcaaggaagttttgattgtgcataaatagagaattgatgatcaataa-----tgggtatgaagaaaactgatgaactctctcatctctc 122  Q
    |||||||||||||||||||| || |||||||||||||||||||| ||||||||| | |      || ||||||||||| ||||||| |||||| ||||||    
T  32471301 tgatcctaaaatcaaggaagcttggattgtgcataaatagagaaatgatgatcactgagggccgggttatgaagaaaattgatgaagtctctcctctctc 32471202  T
Q  123 cct----cactctcttgaagagtaatggcttaagtctttggacttagtcttcttctatc 177  Q
    |||     |||||| |   |||||||  |||| ||||||| ||||||||||||||||||    
T  32471201 cctttggtactctccttgcgagtaataacttatgtctttgaacttagtcttcttctatc 32471143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 34 - 215
Target Start/End: Original strand, 42863670 - 42863854
Alignment:
Q  34 taaaatcaaggaagttttgattgtgcataaatagagaattgatgatcaataatgggtatgaagaaaactgatgaactctctcatctctccct----cact 129  Q
    |||||| ||||||| || |||||||||||||||||| | ||||| ||| |||  ||||||||||||| |||  || |||||| ||||||| |    ||||    
T  42863670 taaaattaaggaagcttagattgtgcataaatagaggaatgatggtcactaagaggtatgaagaaaaatgaccaagtctctcttctctccttttgacact 42863769  T
Q  130 ctcttgaagagtaatggcttaagtctttggacttagtcttcttctatcttttcctatctcttttatgtattaagaacaccaactct 215  Q
    |  | | ||||||||| |||||||||| |||||  ||||||||||||||||| || | |||| | |||| |||||| |||||||||    
T  42863770 cattggtagagtaatgacttaagtcttaggactaggtcttcttctatctttttctttttcttat-tgtactaagaataccaactct 42863854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 182
Target Start/End: Complemental strand, 29346838 - 29346783
Alignment:
Q  127 actctcttgaagagtaatggcttaagtctttggacttagtcttcttctatcttttc 182  Q
    ||||||||  || |||||| |||||||||||||||| |||||||||||||||||||    
T  29346838 actctctttgagggtaatgacttaagtctttggactaagtcttcttctatcttttc 29346783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 35199465 - 35199381
Alignment:
Q  15 aacatgtggctcatgatcctaaaatcaaggaagttttgattgtgcataaatagagaattgatgatcaataatgggtatgaagaaa 99  Q
    |||||||||||  ||||| |||||  |||||| ||| | ||||||||||||| |||| | |||||||||||| | ||||||||||    
T  35199465 aacatgtggctagtgatcttaaaactaaggaaatttgggttgtgcataaataaagaaattatgatcaataattgatatgaagaaa 35199381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 215
Target Start/End: Complemental strand, 3756816 - 3756740
Alignment:
Q  137 agagtaatggcttaagtctttggacttagtcttcttctatcttttcctatctcttttatgtattaagaacaccaactct 215  Q
    ||||||||| |||||||| | |||||  ||||||||||||||||  | || | ||||||||| ||||||||||||||||    
T  3756816 agagtaatgacttaagtcctaggactaggtcttcttctatcttt--cgattttttttatgtactaagaacaccaactct 3756740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 180
Target Start/End: Original strand, 39773360 - 39773403
Alignment:
Q  137 agagtaatggcttaagtctttggacttagtcttcttctatcttt 180  Q
    |||||||||||||| |||||| |||| |||||||||||||||||    
T  39773360 agagtaatggcttaggtctttagactaagtcttcttctatcttt 39773403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 215
Target Start/End: Original strand, 34272322 - 34272511
Alignment:
Q  28 tgatcctaaaatcaaggaagttttgattgtgcataaatagagaattgatgatcaataatgggtatgaagaaaactgatgaa-ctctctcatctctccct- 125  Q
    |||||||||||||||||| | || ||||||||||||||||| || |||| |  |||||||||||||||||||| |||||||  | |||| ||||||| |     
T  34272322 tgatcctaaaatcaaggatgcttagattgtgcataaatagaaaaatgataaataataatgggtatgaagaaaattgatgaatttttctc-tctctccatt 34272420  T
Q  126 ---cactctcttgaagagtaatggcttaagtctttggacttagtcttcttctatcttttcctatctcttttatgtattaagaacaccaactct 215  Q
        ||||||| ||||||||||| ||||||||||| |||||||||||||| ||| ||| ||| ||| |||||| | |||||||||||||||||    
T  34272421 tagtactctctagaagagtaatgacttaagtcttt-gacttagtcttcttttatatttccctttct-ttttatcttttaagaacaccaactct 34272511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 531157 - 531268
Alignment:
Q  16 acatgtggctcatgatcctaaaatcaaggaagttttgattgtgcataaatagag--aattgatgatcaataatgggtatgaagaaaactgatgaactctc 113  Q
    ||||| |||| | ||||||||||||||||||| || || |||||||| | ||||  || |||||||| ||||||||||||||||||| ||||||| ||||    
T  531157 acatgcggctaacgatcctaaaatcaaggaagcttggaatgtgcatataaagaggaaaatgatgatcgataatgggtatgaagaaaattgatgaagtctc 531256  T
Q  114 tcatctctccct 125  Q
    || |||||||||    
T  531257 tcctctctccct 531268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 564112 - 564223
Alignment:
Q  16 acatgtggctcatgatcctaaaatcaaggaagttttgattgtgcataaatagag--aattgatgatcaataatgggtatgaagaaaactgatgaactctc 113  Q
    ||||| |||| | ||||||||||||||||||| || || |||||||| | ||||  || |||||||| ||||||||||||||||||| ||||||| ||||    
T  564112 acatgcggctaacgatcctaaaatcaaggaagcttggaatgtgcatataaagaggaaaatgatgatcgataatgggtatgaagaaaattgatgaagtctc 564211  T
Q  114 tcatctctccct 125  Q
    || |||||||||    
T  564212 tcctctctccct 564223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 564224 - 564280
Alignment:
Q  155 tttggacttagtcttcttctatcttttcctatctcttttatgtattaagaacaccaa 211  Q
    ||||||||| |||||||||||||||||||| ||||||||||| | ||||||||||||    
T  564224 tttggacttggtcttcttctatcttttcctttctcttttatgcactaagaacaccaa 564280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 531269 - 531325
Alignment:
Q  155 tttggacttagtcttcttctatcttttcctatctcttttatgtattaagaacaccaa 211  Q
    ||||||||| |||||||||||||||||||| |||||||||| || |||| |||||||    
T  531269 tttggacttggtcttcttctatcttttcctttctcttttatctactaaggacaccaa 531325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 121
Target Start/End: Original strand, 46505965 - 46506057
Alignment:
Q  28 tgatcctaaaatcaaggaagttttgattgtgcataaatagagaattgatgatcaataatgggtatgaagaaaactgatgaactctctcatctct 121  Q
    |||||||||||| ||||||  || ||| |||||||||||| |||  || |||||||| ||||| ||||||| | ||||||| |||||| |||||    
T  46505965 tgatcctaaaataaaggaaccttggat-gtgcataaatagtgaaaggaggatcaatagtgggtgtgaagaatattgatgaagtctctcctctct 46506057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 198
Target Start/End: Original strand, 29274555 - 29274690
Alignment:
Q  68 agaattgatgatcaataatgggtatgaagaaaactgatgaactctctcatctctccctc-------actctcttgaagagtaatggcttaagtctttgga 160  Q
    |||| |||||||||||||| |||||||| || | ||||||| ||||||  |||||||||       ||||||| | |||||||||| ||||||| |||||    
T  29274555 agaaatgatgatcaataattggtatgaaaaataatgatgaagtctctc--ctctccctcctttgatactctctagtagagtaatggtttaagtccttgga 29274652  T
Q  161 cttagtcttcttctatcttttcctatctcttttatgta 198  Q
    ||||| ||||||||||||||| || | |||||||||||    
T  29274653 cttagccttcttctatctttttctttatcttttatgta 29274690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 100
Target Start/End: Original strand, 49138139 - 49138208
Alignment:
Q  30 atcctaaaatcaaggaagttttgattgtgcataaatagagaattgatgatcaataatgggtatgaagaaaa 100  Q
    |||||||||| ||||||| || |||||| |||||||||  || |||| |||||||||||||||||||||||    
T  49138139 atcctaaaataaaggaagcttggattgtacataaataggaaaatgat-atcaataatgggtatgaagaaaa 49138208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 180
Target Start/End: Original strand, 12900877 - 12900920
Alignment:
Q  137 agagtaatggcttaagtctttggacttagtcttcttctatcttt 180  Q
    |||||||||||||| ||||||| ||| |||||||||||||||||    
T  12900877 agagtaatggcttaggtctttgaactaagtcttcttctatcttt 12900920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 213
Target Start/End: Original strand, 29181546 - 29181753
Alignment:
Q  12 atgaacatgtggctcatgatcctaaaatcaaggaagttttgattgtgcataaatagagaattgatgatcaataatgggtatgaagaaaactgatgaactc 111  Q
    ||||||| ||||||  ||||||||||||||| ||||||| |  | |||||||||||  || | |||||||||||| ||  ||||||| | || || | ||    
T  29181546 atgaacaagtggctagtgatcctaaaatcaaagaagtttgggatatgcataaataggaaaataatgatcaataataggggtgaagaatattgctggagtc 29181645  T
Q  112 tctcatctctccct----cactctcttgaagagtaatggcttaagtctttggacttagtcttcttctatcttttcctatc---tcttttatgtattaaga 204  Q
    |||| |||||||||     ||||| | | ||||||||| ||| |||||| ||||||||| ||||| ||||||| | | ||   ||||||||||| |||||    
T  29181646 tctcctctctccctttagtactctttagtagagtaatgactt-agtcttgggacttagttttcttgtatctttccttttctcttcttttatgtactaaga 29181744  T
Q  205 acaccaact 213  Q
    |||||||||    
T  29181745 acaccaact 29181753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 125
Target Start/End: Complemental strand, 15091948 - 15091898
Alignment:
Q  75 atgatcaataatgggtatgaagaaaactgatgaactctctcatctctccct 125  Q
    |||||||||| ||| ||||||||||| ||||||| || |||||||||||||    
T  15091948 atgatcaatagtggatatgaagaaaattgatgaagtcactcatctctccct 15091898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 181
Target Start/End: Original strand, 4848782 - 4848930
Alignment:
Q  35 aaaatcaaggaagttttgattgtgcataaatagagaattgatgatcaataatgggtatgaagaaaactgatgaactctctcatctctccctc--actctc 132  Q
    ||||||||||||| || |||| ||||||| || |||| || ||||||||||| || |  ||||||| || |||| |||||  ||||||  |   ||||||    
T  4848782 aaaatcaaggaagcttggattatgcataagtatagaaatggtgatcaataataggaacaaagaaaattgttgaaatctcttttctctctttagtactctc 4848881  T
Q  133 ttgaagagtaatggcttaagtctttggacttagtcttcttctatctttt 181  Q
    ||| | ||||||| ||||||||||| |||||||||||| ||||| ||||    
T  4848882 ttgtacagtaatgacttaagtctttagacttagtcttcctctatatttt 4848930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 45610619 - 45610699
Alignment:
Q  28 tgatcctaaaatcaaggaagttttgattgtgcataaatagagaattgatgatcaataatgggtatgaagaaaactgatgaa 108  Q
    |||| |||| |||||||||| |||| |||||||||||||| | |  ||| ||||||||||| ||||||||| | |||||||    
T  45610619 tgattctaagatcaaggaaggtttggttgtgcataaataggggaaagattatcaataatggttatgaagaatattgatgaa 45610699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 179
Target Start/End: Original strand, 49272661 - 49272703
Alignment:
Q  137 agagtaatggcttaagtctttggacttagtcttcttctatctt 179  Q
    ||||||||| ||||||| |||||||| ||||||||||||||||    
T  49272661 agagtaatgacttaagtttttggactaagtcttcttctatctt 49272703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University