View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20764_low_74 (Length: 250)

Name: NF20764_low_74
Description: NF20764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20764_low_74
NF20764_low_74
[»] chr3 (3 HSPs)
chr3 (2-238)||(46520393-46520629)
chr3 (3-174)||(49879675-49879846)
chr3 (162-231)||(46520199-46520268)
[»] chr1 (3 HSPs)
chr1 (2-232)||(18134192-18134422)
chr1 (199-233)||(18133932-18133966)
chr1 (201-233)||(18134059-18134091)
[»] chr5 (1 HSPs)
chr5 (15-231)||(36849464-36849680)
[»] chr6 (4 HSPs)
chr6 (24-135)||(6666977-6667088)
chr6 (2-128)||(6678273-6678398)
chr6 (14-129)||(6618685-6618799)
chr6 (15-129)||(6619757-6619871)
[»] chr4 (1 HSPs)
chr4 (47-135)||(54654503-54654591)


Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 2 - 238
Target Start/End: Complemental strand, 46520629 - 46520393
Alignment:
Q  2 aatacctaaacagatcacggtaattgaaaacactggaaggtggtgtactaaccagaacagattcctttctgagactattaatatgttttgtaatttgatc 101  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  46520629 aatacctaaacagatcacggtaattgaaaacgctggaaggtgatgtactaaccagaacagattcctttctgagactattaatatgttctgtaatttgatc 46520530  T
Q  102 acgtgtgaacaaatcaatcaaggaaacagcatcaacaattgtgtttgagaattttgtttgcttctcttgatcaggtgttggttcactgactttctcttta 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46520529 acgtgtgaacaaatcaatcaaggaaacagcatcaacaattgtgtttgacaattttgtttgcttctcttgatcaggtgttggttcactgactttctcttta 46520430  T
Q  202 gcatctgtcccctcttggttgaatccaattttatttt 238  Q
    |||||||||||||||||||||||||||||||||||||    
T  46520429 gcatctgtcccctcttggttgaatccaattttatttt 46520393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 3 - 174
Target Start/End: Complemental strand, 49879846 - 49879675
Alignment:
Q  3 atacctaaacagatcacggtaattgaaaacactggaaggtggtgtactaaccagaacagattcctttctgagactattaatatgttttgtaatttgatca 102  Q
    |||| ||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||| ||||||||| |   |||||||||    
T  49879846 atacataaacagatcaaggtaattgaaaacactggcaggtggtgtactaacctgaacagattcctttctcagactactaatatgttcttctatttgatca 49879747  T
Q  103 cgtgtgaacaaatcaatcaaggaaacagcatcaacaattgtgtttgagaattttgtttgcttctcttgatca 174  Q
    ||||||||||||||||||||||||||||| ||||| ||||| |||| | |||||||||||||||||||||||    
T  49879746 cgtgtgaacaaatcaatcaaggaaacagcctcaactattgtatttggggattttgtttgcttctcttgatca 49879675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 162 - 231
Target Start/End: Complemental strand, 46520268 - 46520199
Alignment:
Q  162 cttctcttgatcaggtgttggttcactgactttctctttagcatctgtcccctcttggttgaatccaatt 231  Q
    |||||||||||||  | |||||||||| |||||||||||||| ||||||||||| |||||||||||||||    
T  46520268 cttctcttgatcaacttttggttcactcactttctctttagcgtctgtcccctcgtggttgaatccaatt 46520199  T

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Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 2 - 232
Target Start/End: Complemental strand, 18134422 - 18134192
Alignment:
Q  2 aatacctaaacagatcacggtaattgaaaacactggaaggtggtgtactaaccagaacagattcctttctgagactattaatatgttttgtaatttgatc 101  Q
    |||| |||||||||||| |||||||||||||||| ||| |||||||||||||| || ||||||||||||| |||||| ||||||||| |||  |||| ||    
T  18134422 aatatctaaacagatcaaggtaattgaaaacactagaatgtggtgtactaacctgagcagattcctttctcagactactaatatgttctgttgtttggtc 18134323  T
Q  102 acgtgtgaacaaatcaatcaaggaaacagcatcaacaattgtgtttgagaattttgtttgcttctcttgatcaggtgttggttcactgactttctcttta 201  Q
    |||||||||||||||||||||||| || |||||||| || || |||||| ||||||||||||||||| |||||| |  |||||||| ||| || || |||    
T  18134322 acgtgtgaacaaatcaatcaaggagactgcatcaactatcgtatttgaggattttgtttgcttctctggatcagcttgtggttcacggacattttcatta 18134223  T
Q  202 gcatctgtcccctcttggttgaatccaattt 232  Q
    |||||||||||||| ||||||||||||||||    
T  18134222 gcatctgtcccctcgtggttgaatccaattt 18134192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 233
Target Start/End: Complemental strand, 18133966 - 18133932
Alignment:
Q  199 ttagcatctgtcccctcttggttgaatccaatttt 233  Q
    ||||||||||||||||| |||||||||||||||||    
T  18133966 ttagcatctgtcccctcgtggttgaatccaatttt 18133932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 233
Target Start/End: Complemental strand, 18134091 - 18134059
Alignment:
Q  201 agcatctgtcccctcttggttgaatccaatttt 233  Q
    ||||||||||||||| |||||||||||||||||    
T  18134091 agcatctgtcccctcgtggttgaatccaatttt 18134059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 15 - 231
Target Start/End: Original strand, 36849464 - 36849680
Alignment:
Q  15 atcacggtaattgaaaacactggaaggtggtgtactaaccagaacagattcctttctgagactattaatatgttttgtaatttgatcacgtgtgaacaaa 114  Q
    |||| ||||||||||||||||  | || |||||||||||| |||||||||||||||| |||||| ||| ||||| ||| ||||| |  | | ||||  ||    
T  36849464 atcaaggtaattgaaaacactaaatggaggtgtactaacctgaacagattcctttctcagactactaacatgttctgttatttgcttccatctgaatgaa 36849563  T
Q  115 tcaatcaaggaaacagcatcaacaattgtgtttgagaattttgtttgcttctcttgatcaggtgttggttcactgactttctctttagcatctgtcccct 214  Q
    |||||||||||||||||||||   ||| | || | | ||||||||||||||||||| |||| | |||| |||||||||| || || ||||||||||||||    
T  36849564 tcaatcaaggaaacagcatcatttattctcttagtggattttgtttgcttctcttgttcagcttttggctcactgacttccttttgagcatctgtcccct 36849663  T
Q  215 cttggttgaatccaatt 231  Q
    | |||||||||||||||    
T  36849664 cctggttgaatccaatt 36849680  T

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Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 135
Target Start/End: Complemental strand, 6667088 - 6666977
Alignment:
Q  24 attgaaaacactggaaggtggtgtactaaccagaacagattcctttctgagactattaatatgttttgtaatttgatcacgtgtgaacaaatcaatcaag 123  Q
    ||||||||||| ||||||||||||||||||| ||||||||| |||| | |||||  |||||||||  || ||||||||| ||||||||| ||||||||||    
T  6667088 attgaaaacacaggaaggtggtgtactaacctgaacagattgctttttcagacttgtaatatgttcggttatttgatcatgtgtgaacatatcaatcaag 6666989  T
Q  124 gaaacagcatca 135  Q
    |||||| |||||    
T  6666988 gaaacatcatca 6666977  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 128
Target Start/End: Complemental strand, 6678398 - 6678273
Alignment:
Q  2 aatacctaaacagatcacggtaattgaaaacactggaaggtggtgtactaaccagaacagattcctttctgagactattaatatgttttgtaatttgatc 101  Q
    |||| ||||||| |||| |||||||||||  ||| ||||||||||||| |||| || ||||||||||||| |||||| ||||||||| |   ||||| ||    
T  6678398 aatatctaaaca-atcaaggtaattgaaattactagaaggtggtgtaccaacctgatcagattcctttctcagactactaatatgttcttctatttggtc 6678300  T
Q  102 acgtgtgaacaaatcaatcaaggaaac 128  Q
    |||| ||||| ||||||||||||||||    
T  6678299 acgtctgaacgaatcaatcaaggaaac 6678273  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 129
Target Start/End: Complemental strand, 6618799 - 6618685
Alignment:
Q  14 gatcacggtaattgaaaacactggaaggtggtgtactaaccagaacagattcctttctgagactattaatatgttttgtaatttgatcacgtgtgaacaa 113  Q
    ||||| |||||||||||||||   ||||||| ||||||||| |||||||||| ||||| |||| | | ||||||| | | ||||| |||| ||||||  |    
T  6618799 gatcagggtaattgaaaacaccaaaaggtggggtactaacctgaacagattcttttctcagacaagt-atatgttgttttatttggtcacatgtgaatga 6618701  T
Q  114 atcaatcaaggaaaca 129  Q
    ||||||||||||||||    
T  6618700 atcaatcaaggaaaca 6618685  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 129
Target Start/End: Original strand, 6619757 - 6619871
Alignment:
Q  15 atcacggtaattgaaaacactggaaggtggtgtactaaccagaacagattcctttctgagactattaatatgttttgtaatttgatcacgtgtgaacaaa 114  Q
    |||| |||||||||||||||  |||||||| ||| ||||  ||| | ||| |||||| | |||| ||||||||| | | ||||| |||||||||||  ||    
T  6619757 atcaaggtaattgaaaacaccagaaggtggggtaataacttgaaaatatttctttctcatactagtaatatgttgttttatttggtcacgtgtgaatgaa 6619856  T
Q  115 tcaatcaaggaaaca 129  Q
    |||||||||||||||    
T  6619857 tcaatcaaggaaaca 6619871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 47 - 135
Target Start/End: Complemental strand, 54654591 - 54654503
Alignment:
Q  47 tactaaccagaacagattcctttctgagactattaatatgttttgtaatttgatcacgtgtgaacaaatcaatcaaggaaacagcatca 135  Q
    |||||||| ||||||||| |||| | |||||  |||||||||  || |||| |||| |||||||||| ||||||||||||||| |||||    
T  54654591 tactaacctgaacagattgctttttcagacttctaatatgttcagttatttaatcatgtgtgaacaattcaatcaaggaaacatcatca 54654503  T

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