View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20764_low_76 (Length: 249)

Name: NF20764_low_76
Description: NF20764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20764_low_76
NF20764_low_76
[»] chr3 (10 HSPs)
chr3 (1-230)||(4142478-4142707)
chr3 (1-230)||(4158288-4158517)
chr3 (1-230)||(3754087-3754310)
chr3 (38-99)||(3745614-3745675)
chr3 (42-99)||(2441627-2441684)
chr3 (118-181)||(2686776-2686839)
chr3 (122-165)||(12132625-12132668)
chr3 (45-96)||(12132703-12132754)
chr3 (40-94)||(2686698-2686752)
chr3 (118-152)||(3745558-3745592)
[»] chr4 (1 HSPs)
chr4 (42-92)||(20020151-20020201)
[»] chr7 (1 HSPs)
chr7 (122-181)||(1078655-1078714)
[»] chr5 (4 HSPs)
chr5 (44-98)||(2067457-2067511)
chr5 (118-188)||(2067534-2067604)
chr5 (40-88)||(1428079-1428127)
chr5 (131-167)||(41973942-41973978)
[»] scaffold0200 (1 HSPs)
scaffold0200 (131-167)||(1250-1286)


Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 4142478 - 4142707
Alignment:
Q  1 ttaacaaaactatcatcctcatcaagaaattggtagtcaagaacaacaaccaccttgtaattatcctttgaagaatcatagccaaagccaaacgtcatga 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4142478 ttaacaaaactataatcctcatcaagaaattggtagtcaagaacaacaaccaccttgtaattatcctttgaagaatcatagccaaagccaaacgtcatga 4142577  T
Q  101 catttagaccagtagtgggcttttcaaaaaggggcaactccttgaattttcttgtggaagggttccaacatataactaagcttgtatattcgttgtctgc 200  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4142578 catttagaccagtcgtgggcttttcaaaaaggggcaactccttgaattttcttgtggaagggttccaacatataactaagcttgtatattcgttgtctgc 4142677  T
Q  201 aatacacacaatgccgttacaagagccaat 230  Q
    || ||||||||||||||| |||||||||||    
T  4142678 aagacacacaatgccgttgcaagagccaat 4142707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 4158288 - 4158517
Alignment:
Q  1 ttaacaaaactatcatcctcatcaagaaattggtagtcaagaacaacaaccaccttgtaattatcctttgaagaatcatagccaaagccaaacgtcatga 100  Q
    |||| ||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4158288 ttaaaaaaactatcatcctcatcaagaactaggtattcaagaacaacaaccaccttgtaattatcctttgaagaatcatagccaaagccaaacgtcatga 4158387  T
Q  101 catttagaccagtagtgggcttttcaaaaaggggcaactccttgaattttcttgtggaagggttccaacatataactaagcttgtatattcgttgtctgc 200  Q
    |||||| ||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4158388 catttacaccagtcatgggcttttcaaaaaggggcaactccttgaattttcttgttgaagggttccaacatataactaagcttgtatattcgttgtctgc 4158487  T
Q  201 aatacacacaatgccgttacaagagccaat 230  Q
    |||||||||||||||||| ||||| |||||    
T  4158488 aatacacacaatgccgttgcaagaaccaat 4158517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 3754310 - 3754087
Alignment:
Q  1 ttaacaaaactatcatcctcatcaagaaattggtagtcaagaacaacaaccaccttgtaattatcctttgaagaatcatagccaaagccaaacgtcatga 100  Q
    |||| ||| |||| |||||||||||||| | ||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  3754310 ttaaaaaacctataatcctcatcaagaactaggtaggcaagaacaacaaccaccttgtaattatcgtttaaagaatcatagccaaagccaaacgtcatga 3754211  T
Q  101 catttagaccagtagtgggcttttcaaaaaggggcaactccttgaattttcttgtggaagggttccaacatataactaagcttgtatattcgttgtctgc 200  Q
     | |  ||||   | | | ||||||| |||||||||||| ||||| |||| ||||||||||||||||  ||||||||||||   ||   |  ||||||||    
T  3754210 gagtaggacc---attcgacttttcataaaggggcaactgcttgattttttttgtggaagggttccacaatataactaagccgtta---tgattgtctgc 3754117  T
Q  201 aatacacacaatgccgttacaagagccaat 230  Q
    |||||||||||||||||| |||||||||||    
T  3754116 aatacacacaatgccgttgcaagagccaat 3754087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 38 - 99
Target Start/End: Complemental strand, 3745675 - 3745614
Alignment:
Q  38 caagaacaacaaccaccttgtaattatcctttgaagaatcatagccaaagccaaacgtcatg 99  Q
    ||||||||||||||||||||||||||||||||||||||| ||| || |||||||||| ||||    
T  3745675 caagaacaacaaccaccttgtaattatcctttgaagaattataaccgaagccaaacgacatg 3745614  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 99
Target Start/End: Complemental strand, 2441684 - 2441627
Alignment:
Q  42 aacaacaaccaccttgtaattatcctttgaagaatcatagccaaagccaaacgtcatg 99  Q
    |||||||||||| ||||||||||| ||  |||||||||||||||||||||||| ||||    
T  2441684 aacaacaaccactttgtaattatcattaaaagaatcatagccaaagccaaacgccatg 2441627  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 181
Target Start/End: Original strand, 2686776 - 2686839
Alignment:
Q  118 ggcttttcaaaaaggggcaactccttgaattttcttgtggaagggttccaacatataactaagc 181  Q
    ||||||||||||||||||||||| || ||||||| |   |||||||||||  ||||||||||||    
T  2686776 ggcttttcaaaaaggggcaactctttaaattttcgtaaagaagggttccacaatataactaagc 2686839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 165
Target Start/End: Complemental strand, 12132668 - 12132625
Alignment:
Q  122 tttcaaaaaggggcaactccttgaattttcttgtggaagggttc 165  Q
    |||||| ||||||||||||||||||||||||  |||||||||||    
T  12132668 tttcaagaaggggcaactccttgaattttctaatggaagggttc 12132625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 12132754 - 12132703
Alignment:
Q  45 aacaaccaccttgtaattatcctttgaagaatcatagccaaagccaaacgtc 96  Q
    |||||||||||||||||||||  |  ||||||||||||||||||||| ||||    
T  12132754 aacaaccaccttgtaattatcagtacaagaatcatagccaaagccaagcgtc 12132703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 94
Target Start/End: Original strand, 2686698 - 2686752
Alignment:
Q  40 agaacaacaaccaccttgtaattatcctttgaagaatcatagccaaagccaaacg 94  Q
    |||||||||| |||||||||||| |||||  ||||||| ||||| ||||||||||    
T  2686698 agaacaacaatcaccttgtaattctccttaaaagaatcgtagccgaagccaaacg 2686752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 152
Target Start/End: Complemental strand, 3745592 - 3745558
Alignment:
Q  118 ggcttttcaaaaaggggcaactccttgaattttct 152  Q
    ||||||| |||||||||||||||||||||||||||    
T  3745592 ggcttttgaaaaaggggcaactccttgaattttct 3745558  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 92
Target Start/End: Original strand, 20020151 - 20020201
Alignment:
Q  42 aacaacaaccaccttgtaattatcctttgaagaatcatagccaaagccaaa 92  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  20020151 aacaacaaccaccttgtaattgtccgttgaagaatcatagccaaagccaaa 20020201  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 181
Target Start/End: Original strand, 1078655 - 1078714
Alignment:
Q  122 tttcaaaaaggggcaactccttgaattttcttgtggaagggttccaacatataactaagc 181  Q
    |||||| ||||||||||||||||||||||||  ||||||||||| |  ||||||||||||    
T  1078655 tttcaagaaggggcaactccttgaattttctaatggaagggttcaacaatataactaagc 1078714  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 98
Target Start/End: Original strand, 2067457 - 2067511
Alignment:
Q  44 caacaaccaccttgtaattatcctttgaagaatcatagccaaagccaaacgtcat 98  Q
    ||||||||||||||||| ||||  |  |||||||||||||||| |||||||||||    
T  2067457 caacaaccaccttgtaagtatctctaaaagaatcatagccaaaaccaaacgtcat 2067511  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 188
Target Start/End: Original strand, 2067534 - 2067604
Alignment:
Q  118 ggcttttcaaaaaggggcaactccttgaattttcttgtggaagggttccaacatataactaagcttgtata 188  Q
    |||||||||||||| ||||||||||||| | ||||  | |||||||| ||  |||||||||||| ||||||    
T  2067534 ggcttttcaaaaagtggcaactccttgattgttctaatagaagggttacacaatataactaagcctgtata 2067604  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 1428079 - 1428127
Alignment:
Q  40 agaacaacaaccaccttgtaattatcctttgaagaatcatagccaaagc 88  Q
    |||||||||| |||||||||||||||| || || |||||||||| ||||    
T  1428079 agaacaacaatcaccttgtaattatccgttaaacaatcatagccgaagc 1428127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 167
Target Start/End: Original strand, 41973942 - 41973978
Alignment:
Q  131 ggggcaactccttgaattttcttgtggaagggttcca 167  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  41973942 ggggcaattccttgaattttctagtggaagggttcca 41973978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 167
Target Start/End: Original strand, 1250 - 1286
Alignment:
Q  131 ggggcaactccttgaattttcttgtggaagggttcca 167  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  1250 ggggcaattccttgaattttctagtggaagggttcca 1286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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