View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20764_low_84 (Length: 240)
Name: NF20764_low_84
Description: NF20764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20764_low_84 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
| [»] scaffold0229 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 50439425 - 50439664
Alignment:
| Q |
1 |
agatggcggaacaagtcttgccaaaccaacatcactaattttggctacatagtttctgtctagcaagatgtttcctggtttcaagtctctatgtactata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50439425 |
agatggcggaacaagtcttgccaaaccaacatcactaattttggctacatagtttctgtctagcaagatgtttcctggtttcaagtctctatgtactata |
50439524 |
T |
|
| Q |
101 |
ggttctggttttgtttggtgaaggaataacaagccggttccgatttcggctgcaattttgaaccttagctgccaagatagtgaaggactgttgcctcgac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
50439525 |
ggttctggttttgtttggtgaaggaataacaagccggttccgatttcggctgcaattttgaaccttagctgccaagaaagtgaaggactgttgcctcgac |
50439624 |
T |
|
| Q |
201 |
gaaataggcaatcttccaagcttccgtttgacatgtactc |
240 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
50439625 |
gaaataggcaatcttccaagcttccatttgacatgtactc |
50439664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 2 - 182
Target Start/End: Complemental strand, 1274080 - 1273900
Alignment:
| Q |
2 |
gatggcggaacaagtcttgccaaaccaacatcactaattttggctacatagtttctgtctagcaagatgtttcctggtttcaagtctctatgtactatag |
101 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||| || || || ||||| | ||| |||||||||||| ||||||| | |||||||||||||| | |
|
|
| T |
1274080 |
gatggcggtactagtcttgccaaaccaacatcactaatctttgcgacgtagttgcggtcaagcaagatgtttgctggtttaaggtctctatgtactagtg |
1273981 |
T |
|
| Q |
102 |
gttctggttttgtttggtgaaggaataacaagccggttccgatttcggctgcaattttgaaccttagctgccaagatagtg |
182 |
Q |
| |
|
| || |||||||||||||| ||||| | ||||| || || ||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
1273980 |
gctcaggttttgtttggtggaggaagagtaagcctgtgcctatttcagctgcaattttgaaccttagctgccaaggtagtg |
1273900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 35083075 - 35083193
Alignment:
| Q |
8 |
ggaacaagtcttgccaaaccaacatcactaattttggctacatagtttctgtctagcaagatgtttcctggtttcaagtctctatgtactataggttctg |
107 |
Q |
| |
|
|||||||| ||||| ||||||||||||| ||| ||| |||||||||| ||| ||||| |||||||| ||||| ||||| | ||| || || ||||||| |
|
|
| T |
35083075 |
ggaacaagccttgctaaaccaacatcaccaatcttgctcacatagtttcggtcaagcaaaatgtttccaggttttaagtcacgatgcacaatcggttctg |
35083174 |
T |
|
| Q |
108 |
gttttgtttggtgaaggaa |
126 |
Q |
| |
|
|||| || ||||||||||| |
|
|
| T |
35083175 |
gtttagtctggtgaaggaa |
35083193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0229 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0229
Description:
Target: scaffold0229; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 81
Target Start/End: Complemental strand, 88 - 9
Alignment:
| Q |
2 |
gatggcggaacaagtcttgccaaaccaacatcactaattttggctacatagtttctgtctagcaagatgtttcctggttt |
81 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||| || || || ||||| | ||| |||||||||||| ||||||| |
|
|
| T |
88 |
gatggcggtactagtcttgccaaaccaacatcactaatctttgcgacgtagttgcggtcaagcaagatgtttgctggttt |
9 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 6516861 - 6516755
Alignment:
| Q |
20 |
gccaaaccaacatcactaattttggctacatagtttctgtctagcaagatgtttcctggtttcaagtctctatgtactataggttctggttttgtttggt |
119 |
Q |
| |
|
||||||||||||||||| || ||| || |||||| |||||| | |||||||||||||||| || | ||||||||| || ||||| |||| ||||| |
|
|
| T |
6516861 |
gccaaaccaacatcactgatcttgctaacgtagtttttgtctaagagaatgtttcctggtttcatatcacgatgtactattggatctggctttgattggt |
6516762 |
T |
|
| Q |
120 |
gaaggaa |
126 |
Q |
| |
|
||||||| |
|
|
| T |
6516761 |
gaaggaa |
6516755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University