View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20764_low_89 (Length: 231)
Name: NF20764_low_89
Description: NF20764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20764_low_89 |
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| [»] chr3 (3 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 110; Significance: 1e-55; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 114 - 231
Target Start/End: Complemental strand, 51418578 - 51418461
Alignment:
| Q |
114 |
ataatagcttcctcctactactgtttacaccacgagagagacgcggtggactgctgctacagctgaactgatactccaacggtgaaatgaaatacatatc |
213 |
Q |
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| T |
51418578 |
ataatagcttcctcctactactgtttgcaccacgagagagacgcggtggactgctgctacagctgaactgatactccaacggtgaaataaaatacatatc |
51418479 |
T |
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| Q |
214 |
agcatcacgtggacggca |
231 |
Q |
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| T |
51418478 |
agcatcacgtggacggca |
51418461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 141 - 231
Target Start/End: Complemental strand, 51413498 - 51413408
Alignment:
| Q |
141 |
caccacgagagagacgcggtggactgctgctacagctgaactgatactccaacggtgaaatgaaatacatatcagcatcacgtggacggca |
231 |
Q |
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| T |
51413498 |
caccgcgagagagacgaggtggactgctactacagctgaactgatactccaacggtgaaatgaaatacatatcagcatcacgtggtcggca |
51413408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 114 - 213
Target Start/End: Complemental strand, 51416575 - 51416472
Alignment:
| Q |
114 |
ataatagcttcctcctactactgtttacacca----cgagagagacgcggtggactgctgctacagctgaactgatactccaacggtgaaatgaaataca |
209 |
Q |
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| T |
51416575 |
ataatagctttctcctactgctgcttgcaccatgcacgagtgagatgcggtggattgctgctacagctgaactgatattccaacggtgaaacgaaataca |
51416476 |
T |
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| Q |
210 |
tatc |
213 |
Q |
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|||| |
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| T |
51416475 |
tatc |
51416472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 29323760 - 29323711
Alignment:
| Q |
182 |
tgatactccaacggtgaaatgaaatacatatcagcatcacgtggacggca |
231 |
Q |
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| T |
29323760 |
tgatactccaacggtgaaacgaaatacatatcagcatcacgtggacggca |
29323711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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