View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20764_low_92 (Length: 223)
Name: NF20764_low_92
Description: NF20764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20764_low_92 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 37557178 - 37556956
Alignment:
| Q |
1 |
tcttaaatttctgtcgcaaaagttgttcaatcactgttgttcaaataacagaactgaatatttgagagtttacttttgctgctaacttcactttgcaacc |
100 |
Q |
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| T |
37557178 |
tcttaaatttctgtcgcaaaagttgttcaatcactgttgttcaaataacagaactgaatatttgagagtttacttttgctgctaacttcactttgcaacc |
37557079 |
T |
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| Q |
101 |
gaggaatactttgttggcttcgtccaagatttcatcaccatgtgtaagcaatttgttagaataccatgtaagaaaaaatttccctttctctgtttggtaa |
200 |
Q |
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| T |
37557078 |
gaggaatactttgttggcttcgtccaagatttcatcaccatgtgtaagcaatttgttagaataccatgtaagaaaaaatttccctttctctgtttggtaa |
37556979 |
T |
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| Q |
201 |
gttcccttggatctgaaaaattc |
223 |
Q |
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| T |
37556978 |
gttcccttggatctgaaaaattc |
37556956 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 190
Target Start/End: Complemental strand, 15503731 - 15503621
Alignment:
| Q |
80 |
tgctaacttcactttgcaaccgaggaatactttgttggcttcgtccaagatttcatcaccatgtgtaagcaatttgttagaataccatgtaagaaaaaat |
179 |
Q |
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||||||||| ||||| || || ||||| |||| || ||||| || | ||||| ||||||||| | ||||||| |||||||||||| || || || ||| |
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| T |
15503731 |
tgctaacttgactttacatcccaggaaagctttattagcttcatctaggatttgatcaccatgattcagcaattggttagaataccaagttaggaagaat |
15503632 |
T |
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| Q |
180 |
ttccctttctc |
190 |
Q |
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| T |
15503631 |
ttccctttctc |
15503621 |
T |
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