View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20764_low_94 (Length: 221)
Name: NF20764_low_94
Description: NF20764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20764_low_94 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 32409702 - 32409500
Alignment:
| Q |
1 |
aagcatcgcttgatgttgaaatggatctgtcacctgatgtgaaagtgcagtcatcacctatcatacaaatggagccatcaccaaagtccaataaaaggat |
100 |
Q |
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| T |
32409702 |
aagcatcgcttgatgttgaaatggatctgtcacatgatgtgaaagtgtagtcatcacctatcatacaaatggagccatcaccaaagtccaataaaaggat |
32409603 |
T |
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| Q |
101 |
gtgtacaatccttgcaaaaagaattagggcatgtttgtgcttgaaccaacatggagataaagatttgaacaatttttgatttgacaaggttttgtcatat |
200 |
Q |
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| T |
32409602 |
gtgtacaatccttgcaaaaagaattagggcatgtttgtgcttgaaccaacatggagataaagatttgaacaatttttgatttgacaaggttttgtcatat |
32409503 |
T |
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| Q |
201 |
aaa |
203 |
Q |
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||| |
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| T |
32409502 |
aaa |
32409500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 46 - 181
Target Start/End: Complemental strand, 3259485 - 3259349
Alignment:
| Q |
46 |
tgcagtcatcacctatcatacaaatggagccatcaccaaagtccaataaaaggatgtgtacaatccttgcaaaaagaattagg-gcatgtttgtgcttga |
144 |
Q |
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| T |
3259485 |
tgcagtcattacctatcatggaaatggagccaccaccaaagtccaatagaagtatctttacaagatttgcaaaaaaaaatgggtgcatgtttatgcttga |
3259386 |
T |
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| Q |
145 |
accaacatggagataaagatttgaacaatttttgatt |
181 |
Q |
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| T |
3259385 |
accagcatagagataaaggtttgaacaacatttgatt |
3259349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 50 - 179
Target Start/End: Complemental strand, 3322508 - 3322379
Alignment:
| Q |
50 |
gtcatcacctatcatacaaatggagccatcaccaaagtccaataaaaggatgtgtacaatccttgcaaaaagaattagggcatgtttgtgcttgaaccaa |
149 |
Q |
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||||||||||||||| |||||||||| |||||||||||||| ||| || | |||| ||||||||||||| | ||||||| ||||||||||| |
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| T |
3322508 |
gtcatcacctatcatggtaatggagccacaaccaaagtccaatagaagtatctttacaggatttgcaaaaagaatgggtacatgtttatgcttgaaccag |
3322409 |
T |
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| Q |
150 |
catggagataaagatttgaacaatttttga |
179 |
Q |
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| T |
3322408 |
catagagataaaggtttgaacaatgtttga |
3322379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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