View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20764_low_95 (Length: 220)

Name: NF20764_low_95
Description: NF20764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20764_low_95
NF20764_low_95
[»] chr6 (12 HSPs)
chr6 (18-186)||(3003533-3003704)
chr6 (18-197)||(2929456-2929638)
chr6 (18-191)||(2952086-2952262)
chr6 (18-197)||(2974154-2974336)
chr6 (18-191)||(2927313-2927489)
chr6 (18-204)||(2937600-2937789)
chr6 (18-204)||(2964649-2964838)
chr6 (18-185)||(2997122-2997292)
chr6 (18-184)||(2934759-2934928)
chr6 (43-183)||(2978408-2978550)
chr6 (18-201)||(2658734-2658926)
chr6 (18-183)||(2983024-2983195)
[»] chr7 (1 HSPs)
chr7 (18-182)||(3339187-3339354)
[»] scaffold0024 (3 HSPs)
scaffold0024 (18-204)||(34991-35180)
scaffold0024 (138-183)||(45123-45168)
scaffold0024 (81-129)||(44743-44791)
[»] chr3 (2 HSPs)
chr3 (22-200)||(49613580-49613761)
chr3 (35-179)||(49618589-49618735)


Alignment Details
Target: chr6 (Bit Score: 118; Significance: 2e-60; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 3003533 - 3003704
Alignment:
Q  18 gtaatgacactgctccaaagcaatcatattccgaaataaagattcggtgccatccccaactaataattgaggaatttcaagaactcctcccgaaaacctc 117  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||   |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3003533 gtaatgacactgctccaaagcaaccatattccgaaataaagtttcggtcgaatccgcaactaataattgaggaatttcaagaactcctcccgaaaacctc 3003632  T
Q  118 cattcaagtaaa---tcactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactc 186  Q
     | |||||||||   | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  3003633 aagtcaagtaaacacttactttcagtgttcactttaaatctaactccagcttctaacaactcagttgcactc 3003704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 2929638 - 2929456
Alignment:
Q  18 gtaatgacactgctccaaagcaatcatattccgaaataaagattcggtgccatccccaactaataattgaggaatttcaagaactcctcccgaaaacctc 117  Q
    ||||||| |||||||||||||||||||||||| |||||||| |||||| |||||  |||||  ||||||||||||||||||||||||||| ||||||||     
T  2929638 gtaatgaaactgctccaaagcaatcatattccaaaataaagtttcggtcccatctgcaactgttaattgaggaatttcaagaactcctcctgaaaacctt 2929539  T
Q  118 cattcaagtaaa---tcactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactccgtagttgtat 197  Q
     | |||||||||   | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2929538 aagtcaagtaaacacttacttttagtgttcactttaaacctaactccagcttctaacaactcagttgcactccgtagttgtat 2929456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 2952262 - 2952086
Alignment:
Q  18 gtaatgacactgctccaaagcaatcatattccgaaataaagattcggtgccatccccaactaataattgaggaatttcaagaactcctcccgaaaacctc 117  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||   ||||  ||||  ||||||||||||||||||||||||| |||||||||||    
T  2952262 gtaatgacactgctccaaagcaaccatattccgaaataaagtttcggttgaatcctgaacttttaattgaggaatttcaagaactccttccgaaaacctc 2952163  T
Q  118 cattcaagtaaa---tcactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactccgtag 191  Q
     | |||||||||   | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2952162 aagtcaagtaaacacttactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtag 2952086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 2974336 - 2974154
Alignment:
Q  18 gtaatgacactgctccaaagcaatcatattccgaaataaagattcggtgccatccccaactaataattgaggaatttcaagaactcctcccgaaaacctc 117  Q
    ||||||||||||||||||||||| |||||||||||| |||  |||||| |||||   ||||  |||||||||||||||||||||||||||||||||||||    
T  2974336 gtaatgacactgctccaaagcaaccatattccgaaacaaaatttcggtcccatcttgaactgttaattgaggaatttcaagaactcctcccgaaaacctc 2974237  T
Q  118 cattcaagtaaa---tcactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactccgtagttgtat 197  Q
     | ||| |||||   ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  2974236 aagtcatgtaaacattcacttttagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgtat 2974154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 2927489 - 2927313
Alignment:
Q  18 gtaatgacactgctccaaagcaatcatattccgaaataaagattcggtgccatccccaactaataattgaggaatttcaagaactcctcccgaaaacctc 117  Q
    ||||||||||||||||||||||| ||||||||| ||||||| ||| ||   ||||  ||||  |||||||||||||||||||||||||||||||||||||    
T  2927489 gtaatgacactgctccaaagcaaccatattccgtaataaagtttcagtcgaatcctgaacttttaattgaggaatttcaagaactcctcccgaaaacctc 2927390  T
Q  118 cattcaagtaaa---tcactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactccgtag 191  Q
     | |||||||||   | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2927389 aagtcaagtaaacacttactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtag 2927313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 2937789 - 2937600
Alignment:
Q  18 gtaatgacactgctccaaagcaatcatattccgaaataaagattcggtgccatccccaactaataattgaggaatttcaagaactcctcccgaaaacctc 117  Q
    ||||||||||||||||||||||| |||||||| ||| |||  ||||||   |||| |||||  ||||||||||||||||||||||||||| ||||| |||    
T  2937789 gtaatgacactgctccaaagcaaccatattccaaaacaaaatttcggtcgaatcctcaactgttaattgaggaatttcaagaactcctcctgaaaatctc 2937690  T
Q  118 cattcaagtaaa---tcactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactccgtagttgtatcatctgt 204  Q
     | |||||||||   | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||    
T  2937689 aagtcaagtaaacaattactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgtattatctgt 2937600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 2964838 - 2964649
Alignment:
Q  18 gtaatgacactgctccaaagcaatcatattccgaaataaagattcggtgccatccccaactaataattgaggaatttcaagaactcctcccgaaaacctc 117  Q
    |||| |||||||||||||||||| |||||||||||| | |  |||||| |||||   | ||| |||||||||||||||||||||||||||||||||||||    
T  2964838 gtaacgacactgctccaaagcaaccatattccgaaacataatttcggtcccatcgtgagctattaattgaggaatttcaagaactcctcccgaaaacctc 2964739  T
Q  118 cattcaagtaaa---tcactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactccgtagttgtatcatctgt 204  Q
     | |||||||||   | ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||| ||||||    
T  2964738 aagtcaagtaaacacttactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactaggtagatgtattatctgt 2964649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 2997122 - 2997292
Alignment:
Q  18 gtaatgacactgctccaaagcaatcatattccgaaataaagattcggtgccatccccaactaataattgaggaatttcaagaactcctcccgaaaacctc 117  Q
    ||||||| ||||||||||||||| ||||||||||||||||| |||||| | |||| |||| | |||   |||||||||||||||| ||||||||||||||    
T  2997122 gtaatgaaactgctccaaagcaaccatattccgaaataaagcttcggtccgatcctcaacaattaacgaaggaatttcaagaacttctcccgaaaacctc 2997221  T
Q  118 cattcaagtaaa---tcactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcact 185  Q
     | |||||||||   |  |||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  2997222 aagtcaagtaaacacttgcttttagtgttcactttaaacttaactccagcttctaacaactcagttgcact 2997292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 2934928 - 2934759
Alignment:
Q  18 gtaatgacactgctccaaagcaatcatattccgaaataaagattcggtgccatccccaactaataattgaggaatttcaagaactcctcccgaaaacctc 117  Q
    ||||||||||||||||||||||| |||||| |||||  ||  ||| || | |||  ||||   |||||||||||||||||||||||||||||||||||||    
T  2934928 gtaatgacactgctccaaagcaaccatatttcgaaacgaaatttcagtcctatcgtcaaccgttaattgaggaatttcaagaactcctcccgaaaacctc 2934829  T
Q  118 cattcaagtaaa---tcactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcac 184  Q
     | |||||||||   | ||||| ||| |||||||||||||||||||||||||||||||| ||||||||||    
T  2934828 aagtcaagtaaacacttacttttagtattcactttaaacctaactccagcttctaacaattcagttgcac 2934759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 43 - 183
Target Start/End: Complemental strand, 2978550 - 2978408
Alignment:
Q  43 atattccgaaataaagattcggtgccatccccaactaataattgaggaatttcaagaactcctcccgaaaacctccattcaagtaaa---tcactttcag 139  Q
    |||| |||||| |||  |||||| |||||| |||||  ||||||||||||||||||||||||||||||||||||| | |||||||||   ||||||| ||    
T  2978550 atataccgaaacaaaatttcggtcccatcctcaactcttaattgaggaatttcaagaactcctcccgaaaacctcaaatcaagtaaacactcacttttag 2978451  T
Q  140 tgttcactttaaacctaactccagcttctaacaactcagttgca 183  Q
    |||||||||||||||||| ||||||||||||||| |||||||||    
T  2978450 tgttcactttaaacctaa-tccagcttctaacaattcagttgca 2978408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 2658734 - 2658926
Alignment:
Q  18 gtaatgacactgctccaaagcaatcatattccgaaataaagattcggtgccatccccaactaataattgaggaatttcaagaactcctcccga------a 111  Q
    ||||||||| ||||||||||||| |||||| ||||| |||  ||| || | |||  ||||   ||||||||||||||||||||||||||| ||      |    
T  2658734 gtaatgacattgctccaaagcaaccatatttcgaaacaaaatttcagtcctatcgtcaaccgttaattgaggaatttcaagaactcctcctgattttgaa 2658833  T
Q  112 aacctccattcaagtaaa---tcactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactccgtagttgtatcatc 201  Q
    |||||| | |||||||||   | ||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  2658834 aacctcaagtcaagtaaacacttacttttagtgctcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgtatcatc 2658926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 183
Target Start/End: Complemental strand, 2983195 - 2983024
Alignment:
Q  18 gtaatgacactgctccaaagcaatcatattccgaaataaagattcggtg---ccatccccaactaataattgaggaatttcaagaactcctcccgaaaac 114  Q
    ||||||||| |||||||||||||||||||||||||| |||  ||||||    | |||   ||||| ||||||||||||||||||||||||||||||||||    
T  2983195 gtaatgacaatgctccaaagcaatcatattccgaaacaaaatttcggtcgtccgatcatgaactattaattgaggaatttcaagaactcctcccgaaaac 2983096  T
Q  115 ctccattcaagtaaa---tcactttcagtgttcactttaaacctaactccagcttctaacaactcagttgca 183  Q
    ||| | |||  ||||   | ||||| ||| ||||||| |||||||||||||||||||| ||||| |||||||    
T  2983095 ctcaagtcatataaacacttacttttagttttcacttgaaacctaactccagcttctaccaactgagttgca 2983024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 3339354 - 3339187
Alignment:
Q  18 gtaatgacactgctccaaagcaatcatattccgaaataaagattcggtgccatccccaactaataattgaggaatttcaagaactcctcccgaaaacctc 117  Q
    ||||||||||||||||||||||| |||||||||||| |||  |||||| |||||  |||||  |||||||||||||||||||||||||||||||||||||    
T  3339354 gtaatgacactgctccaaagcaaccatattccgaaacaaaatttcggtcccatcgtcaactgttaattgaggaatttcaagaactcctcccgaaaacctc 3339255  T
Q  118 cattcaagtaaa---tcactttcagtgttcactttaaacctaactccagcttctaacaactcagttgc 182  Q
     |  ||||||||   ||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  3339254 aagccaagtaaacactcacttttagtgttcactttaaacctaactcctgcttctaacaactcagttgc 3339187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 34991 - 35180
Alignment:
Q  18 gtaatgacactgctccaaagcaatcatattccgaaataaagattcggtgccatccccaactaataattgaggaatttcaagaactcctcccgaaaacctc 117  Q
    ||||||||||||||||||||||| |||||||||||| |||  |||||| |||||| |||||  |||| ||||||||||||| |||||| ||||||||| |    
T  34991 gtaatgacactgctccaaagcaaccatattccgaaacaaaatttcggtcccatcctcaacttctaatcgaggaatttcaagcactccttccgaaaacccc 35090  T
Q  118 cattcaagtaaa---tcactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactccgtagttgtatcatctgt 204  Q
     | |||||||||   ||||||| ||  ||||||| |||||||||||||||||||||||||| |||||||||| |||| ||||| ||||||    
T  35091 aagtcaagtaaacactcacttttaggcttcacttgaaacctaactccagcttctaacaactgagttgcactcggtagatgtattatctgt 35180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 183
Target Start/End: Original strand, 45123 - 45168
Alignment:
Q  138 agtgttcactttaaacctaactccagcttctaacaactcagttgca 183  Q
    |||| |||||| |||||||||||||||||||||||||||| |||||    
T  45123 agtggtcacttgaaacctaactccagcttctaacaactcatttgca 45168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 44743 - 44791
Alignment:
Q  81 taattgaggaatttcaagaactcctcccgaaaacctccattcaagtaaa 129  Q
    ||||||||||||||||||||||| | | ||||||||| | |||||||||    
T  44743 taattgaggaatttcaagaactctttctgaaaacctcaaatcaagtaaa 44791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 22 - 200
Target Start/End: Complemental strand, 49613761 - 49613580
Alignment:
Q  22 tgacactgctccaaagcaatcatattccgaaataaagattcggtgccatccccaactaataattgaggaatttcaagaactcctcccgaaaacctccatt 121  Q
    ||||| ||||||||||||| |||||||||||| |||  ||| || | |||| |||||   |||||||||||||||||||| | ||| ||||||||| | |    
T  49613761 tgacattgctccaaagcaaccatattccgaaacaaaatttcagtccaatcctcaactttcaattgaggaatttcaagaacccgtcctgaaaacctcaaat 49613662  T
Q  122 caagtaaa---tcactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactccgtagttgtatcat 200  Q
    ||||||||   ||||||| |||||||||||||||||| || ||||||||||||||||||||||||||| |||| ||| ||||    
T  49613661 caagtaaacactcacttttagtgttcactttaaacctcaccccagcttctaacaactcagttgcactctgtagatgtttcat 49613580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 35 - 179
Target Start/End: Complemental strand, 49618735 - 49618589
Alignment:
Q  35 aagcaatcatattccgaaataaagattcggtgccatccccaactaataattgaggaatttcaagaactcctcccgaaaacctccattcaagtaaatc--- 131  Q
    |||||| |||||||| |||||||| | |||| |  ||| |||||  ||||||||||||||||||||||| ||| ||||||||| | |||||||||         
T  49618735 aagcaaccatattcc-aaataaagttacggtccggtcctcaactcttaattgaggaatttcaagaactcgtccggaaaacctcaagtcaagtaaacatgt 49618637  T
Q  132 actttcagtgttcactttaaacctaactccagcttctaacaactcagt 179  Q
    | ||| ||||||||||||||||||||||||||||||||||||||||||    
T  49618636 agttttagtgttcactttaaacctaactccagcttctaacaactcagt 49618589  T

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