View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20765_high_12 (Length: 261)
Name: NF20765_high_12
Description: NF20765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20765_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 34796557 - 34796803
Alignment:
| Q |
1 |
ggtgctgcttcttctgtgtgtttggagctatggcatgcttgtgctggtcctatgatctctttgccaaagaaaggaagtgttgttgtttacttccctcaag |
100 |
Q |
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| T |
34796557 |
ggtgctggttcttctgtgtgtttggagctatggcatgcttgtgctggtcctatgatctctttgccaaagaaaggaagtgttgttgtttacttccctcaag |
34796656 |
T |
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| Q |
101 |
gacacttggaacatcttcatgattttccgttatctttttcggataatattccttctcatgtgttctgtcgtgttgttgatgtcaagcttcatgtgagttt |
200 |
Q |
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| T |
34796657 |
gacacttggaacatcttcatgattttccgttatctttttcggataatattccttctcatgtgttctgtcgtgttgttgatgtcaagcttcatgtgagttt |
34796756 |
T |
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| Q |
201 |
ttgttattcccttcttttcatcgtacaaatcgaatgttgtcttttat |
247 |
Q |
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| T |
34796757 |
ttgttattcccttcttttcatcgtacaaatcgaatgttgtcttttat |
34796803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 22234596 - 22234680
Alignment:
| Q |
29 |
tatggcatgcttgtgctggtcctatgatctctttgccaaagaaaggaagtgttgttgtttacttccctcaaggacacttggaaca |
113 |
Q |
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| T |
22234596 |
tatggcatgcttgtgctggtcctcttacctcacttcctaagaaaggaaatgttgtggtgtattttccacaaggtcacttggaaca |
22234680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 194
Target Start/End: Complemental strand, 4274533 - 4274354
Alignment:
| Q |
12 |
ttctgtgtgtttggagctatggcatgcttgtgctggtcctatgatctctttgccaaagaaaggaagtgttgttgtttacttccctcaaggacacttggaa |
111 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||| | || ||||||||||| ||| |
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| T |
4274533 |
ttctgtttgtttggagctatggcatgcttgtgctggtcctttgatctctttaccaaagaaaggaagcattgttgtttatgttccacaaggacactttgaa |
4274434 |
T |
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| Q |
112 |
catcttcatgattttccgttatctttttcggataatattccttctcatgtgttctgtcgtgttgttgatgtcaagcttcatgt |
194 |
Q |
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| T |
4274433 |
caagctcatgattttcctgtttctgctt---gtaatattccacctcatgttttctgtcgtgttcttgatgttaagcttcatgt |
4274354 |
T |
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