View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20765_high_15 (Length: 234)
Name: NF20765_high_15
Description: NF20765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20765_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 89 - 232
Target Start/End: Original strand, 16954776 - 16954919
Alignment:
| Q |
89 |
ttcgaacatttgtaaaaatttatgaaaatctattggaagtttacaatctttgatttgatcatagcaccttttcctcaaactttcactcaaatccaaacta |
188 |
Q |
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| T |
16954776 |
ttcgaacatttgtaaaaatttatgaaaatctattggaagtttacaatctttgatttgatcataacaccttttcctcaaactttcactcaaatccaaacta |
16954875 |
T |
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| Q |
189 |
aaacataatcccaggtcaagagattcaagaagaagacatccatt |
232 |
Q |
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| T |
16954876 |
aaacataatcctaggtcaagcgattcaagaagaggacatccatt |
16954919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 115 - 234
Target Start/End: Original strand, 16965381 - 16965500
Alignment:
| Q |
115 |
aatctattggaagtttacaatctttgatttgatcatagcaccttttcctcaaactttcactcaaatccaaactaaaacataatcccaggtcaagagattc |
214 |
Q |
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|||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
16965381 |
aatctactggaagtttaaaatctttgatttgatcatagcaccttttcctcaatctttcactccaatccaacctaaaacataatcccaggtcaagagattc |
16965480 |
T |
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| Q |
215 |
aagaagaagacatccattaa |
234 |
Q |
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| T |
16965481 |
aagaagagaacattcattaa |
16965500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 16954621 - 16954702
Alignment:
| Q |
1 |
ccatcgataactggccacaaatttcaataccgtcacttaaacaaacctctacgacaggaataagtaaatatcacaacaatag |
82 |
Q |
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| T |
16954621 |
ccatcgataactggccacaaatttcaataccgtcacttaaacaaacctctacgacaggaataagtaaatatcacaacaatag |
16954702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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