View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20765_high_3 (Length: 576)
Name: NF20765_high_3
Description: NF20765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20765_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 523; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 13 - 558
Target Start/End: Original strand, 53618009 - 53618557
Alignment:
| Q |
13 |
aatatgtaagtagagtttct---atactaggacatgttcataagacaaatagtggtaaactgtgggaccctttaaggtacattagaacgcaagtattatt |
109 |
Q |
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| T |
53618009 |
aatatgtaagtagagtttcttctatactaggacatgttcataagacaaatagtggtaaactgtgggaccctttaaggtacattagaacgcaaatattatt |
53618108 |
T |
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| Q |
110 |
tttgtattggagtaaacataggtgaatgttcttaaatcacatgtgaaaacttggggcccagtaaaagtaacttaataacatcaaacattgttctctaatc |
209 |
Q |
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| T |
53618109 |
tttgtattggagtaaacataggtgaatgttcttaaatcacatgtgaaaacttggggcccagtaaaagtaacttaataacatcaaacattgttctctaatc |
53618208 |
T |
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| Q |
210 |
tacttgctccggagatactctaatgagtccacactcagctattgtcatcttcattttacattaacttttactgttaatggattttatacatacaagttac |
309 |
Q |
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| T |
53618209 |
tacttgctccggagatactctaatgagtccacactcagctattgtcatcttcattttacattaacttttactgttgatggattttatacatacaagttac |
53618308 |
T |
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| Q |
310 |
ttgaacagagttactggtttgtccgtttgggcatatttactctgtttggcttgctgccaagtttcatttggtgtttgttgagccttttccgaaccttact |
409 |
Q |
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| T |
53618309 |
ttgaacagagttactggtttgtccgtttgggcatatttactctgtttggcttgctgccaagtttcatttggtgtttgttgagccttttccgaaccttact |
53618408 |
T |
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| Q |
410 |
agttaataattttgttgcagaatggaataatgcaaactcacgatgaagaaactcgaaagtttttcaagcattcttcagtttcatgtgtgttgtcacctcg |
509 |
Q |
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| T |
53618409 |
agttaataattttgttgcagaatggaataatgcaaactcatgatgaagaaactcgaaagtttttcaagcattcttcagtttcatgtgtgttgtcacctcg |
53618508 |
T |
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| Q |
510 |
atatgccagcagtaagcttagcattttcaagcagcaggcatgctttatg |
558 |
Q |
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| T |
53618509 |
atatgccagcagtaagcttagcattttcaagcagcaggcatgctttatg |
53618557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 122 - 202
Target Start/End: Original strand, 14344716 - 14344796
Alignment:
| Q |
122 |
taaacataggtgaatgttcttaaatcacatgtgaaaacttggggcccagtaaaagtaacttaataacatcaaacattgttc |
202 |
Q |
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| T |
14344716 |
taaaaataggtgaatgttcttaaataacacatggaaacttggggcccactaaaagtaactcaagaacataaagcattgttc |
14344796 |
T |
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