View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20765_high_4 (Length: 560)
Name: NF20765_high_4
Description: NF20765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20765_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 1 - 550
Target Start/End: Original strand, 49301836 - 49302385
Alignment:
| Q |
1 |
aggtggatgctagaggtaaattcaaaacaatattaatatactcattatcattcttcaatatttataccattattagaatataatcaaatagttaactttc |
100 |
Q |
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| T |
49301836 |
aggtggatgctagaggtaaattcaaaacaatattaatatactcattatcattcttcaatatttataccattattagaatataatcaaatagttaactttc |
49301935 |
T |
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| Q |
101 |
annnnnnnnattattgattattttacagaccattccagaccaaattctagagagtcaccaattatctggtatcacactagaatatagaagggaatgtgga |
200 |
Q |
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| T |
49301936 |
attttttttattattgattattttacagaccattccagaccaaattctagagagtcaccaattatctggtatcacactagaatatagaagggaatgtgga |
49302035 |
T |
|
| Q |
201 |
agttcagatatagttcaatcactatgtgaacctgaagaagatgaaatagttcttaatggtatggttgaaccagattactgcacaaatctgctcaatggat |
300 |
Q |
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| T |
49302036 |
agttcagatatagttcaatcactatgtgaacctgaagaagatgaaatagttcttaatggtatggttgaaccagattactgcacaaatctgcttaatggat |
49302135 |
T |
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| Q |
301 |
tgtcttttgtaaaatcagatattataaatggtggtggagttttgagctaccttgagcaaaggccaataaggtatacacatcttttacaagcaaagggaga |
400 |
Q |
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| T |
49302136 |
tgtcttttgtaaaatcagatattataaatggtggtggagttttgagctaccttgagcaaaggccaataaggtatacacatcttttacaagcaaagggaga |
49302235 |
T |
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| Q |
401 |
aaaacaaaatgaagaaattgttagaggaaagactacatggaagaggaaattcactacatgtccattttctacatagtaatgtatgttgaagtgggcttta |
500 |
Q |
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| T |
49302236 |
aaaacaaaatgaagaaattgttagaggaaagactacatggaagaggaaattcactacatgtccattttctacatagtaatgtatgttgaagtggtcttta |
49302335 |
T |
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| Q |
501 |
agaattgggaactgaaagggtacaaagttcaaattgtactatggtctgtg |
550 |
Q |
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| T |
49302336 |
agaattgggaactgaaagggtacaaagttcaaattgtactatggtgtgtg |
49302385 |
T |
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