View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20765_high_7 (Length: 333)

Name: NF20765_high_7
Description: NF20765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20765_high_7
NF20765_high_7
[»] chr2 (3 HSPs)
chr2 (1-317)||(42638452-42638768)
chr2 (221-317)||(36276045-36276141)
chr2 (90-126)||(42631074-42631110)
[»] chr7 (1 HSPs)
chr7 (221-317)||(28171317-28171412)
[»] chr6 (1 HSPs)
chr6 (246-317)||(20719930-20720001)
[»] chr8 (1 HSPs)
chr8 (221-317)||(5221714-5221809)
[»] chr1 (1 HSPs)
chr1 (221-255)||(2877746-2877780)
[»] chr4 (1 HSPs)
chr4 (221-298)||(36962510-36962588)


Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 42638768 - 42638452
Alignment:
Q  1 tgaggttgtggaatgatttcacatttcacacgtttgacaaactggttacgagatatggaaaggggaannnnnnnngcaaggaatttacttccaaaattcc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||    
T  42638768 tgaggttgtggaatgatttcacatttcacacgtttgacaaactggttacgagatatggaaaggggaattttttttgcaaggaatttacttccaaaattcc 42638669  T
Q  101 cattctatgccttaattaggcatacacaaactatactccatctaatacatacctttgactttgaacatcccaaaagaaaaaagttttgcaatttgcacct 200  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  42638668 cattctatgcattaattaggcatacacaaactatactccatctaatacatacctttgactttgaacatcccaaaagaaaaaagttttgcaatttgcaact 42638569  T
Q  201 ccaaagtccaaacccacatttagagaggtggtggaatccgaagaagcgttggaaaaggacacttaagggtgtcaaattgagctcaactatggtgatgaca 300  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  42638568 ccaaagtccaaacccacatttagagagatggtggaatctgaagaagcgttggaaaaggacacttaagggtgtcaaattgagctcaactatggtgatgata 42638469  T
Q  301 aaatgttgtttggtttg 317  Q
    |||||||||||||||||    
T  42638468 aaatgttgtttggtttg 42638452  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 221 - 317
Target Start/End: Complemental strand, 36276141 - 36276045
Alignment:
Q  221 tagagaggtggtggaatccgaagaagcgttggaaaaggacacttaagggtgtcaaattgagctcaactatggtgatgacaaaatgttgtttggtttg 317  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||  ||||| ||||||||||||||  ||| |||||||||||    
T  36276141 tagagaggtggtggaatccgaagaagtgttggaaaaggacatttaagggtgccaaattaggctcagctatggtgatgacatgatgatgtttggtttg 36276045  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 126
Target Start/End: Complemental strand, 42631110 - 42631074
Alignment:
Q  90 tccaaaattcccattctatgccttaattaggcataca 126  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  42631110 tccaaacttcccattccatgccttaattaggcataca 42631074  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 221 - 317
Target Start/End: Original strand, 28171317 - 28171412
Alignment:
Q  221 tagagaggtggtggaatccgaagaagcgttggaaaaggacacttaagggtgtcaaattgagctcaactatggtgatgacaaaatgttgtttggtttg 317  Q
    ||||||||||||||||| |||| |||| ||||||||| ||| ||| ||||||||||||| ||||||||||||||||||||| | | |||||||||||    
T  28171317 tagagaggtggtggaattcgaaaaagcattggaaaagaaca-ttatgggtgtcaaattgggctcaactatggtgatgacaagacgatgtttggtttg 28171412  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 317
Target Start/End: Original strand, 20719930 - 20720001
Alignment:
Q  246 gcgttggaaaaggacacttaagggtgtcaaattgagctcaactatggtgatgacaaaatgttgtttggtttg 317  Q
    ||||||||||| ||| ||||  | |||||||||| ||||||||||||||| ||||| |||||||||||||||    
T  20719930 gcgttggaaaaagacgcttagtgctgtcaaattgggctcaactatggtgacgacaagatgttgtttggtttg 20720001  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 221 - 317
Target Start/End: Complemental strand, 5221809 - 5221714
Alignment:
Q  221 tagagaggtggtggaatccgaagaagcgttggaaaaggacacttaagggtgtcaaattgagctcaactatggtgatgacaaaatgttgtttggtttg 317  Q
    |||| |||||||||||||||||||||||| |||||| |||| |   ||||||| ||||| ||| | ||| ||||||||||| ||| |||||||||||    
T  5221809 tagataggtggtggaatccgaagaagcgtcggaaaaagacattggtgggtgtc-aattgggctaagctagggtgatgacaagatgatgtttggtttg 5221714  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 255
Target Start/End: Original strand, 2877746 - 2877780
Alignment:
Q  221 tagagaggtggtggaatccgaagaagcgttggaaa 255  Q
    |||||||||||||||||||||||||||||||||||    
T  2877746 tagagaggtggtggaatccgaagaagcgttggaaa 2877780  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 298
Target Start/End: Complemental strand, 36962588 - 36962510
Alignment:
Q  221 tagagaggtggtggaatccgaagaagcgttggaaaaggacacttaa-gggtgtcaaattgagctcaactatggtgatga 298  Q
    ||||||||||||| |||||||| ||||||||| |||||||| |||| || || ||||||| ||||  |||||| |||||    
T  36962588 tagagaggtggtgcaatccgaaaaagcgttgggaaaggacatttaatggatgccaaattgggctcggctatggagatga 36962510  T

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