View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20765_high_9 (Length: 327)
Name: NF20765_high_9
Description: NF20765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20765_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 6 - 285
Target Start/End: Complemental strand, 4047639 - 4047360
Alignment:
| Q |
6 |
agtgagatgaacaaaacaacccttaaaaataatcagatttgttattaaacttcactaattataagatttgaattctgttattaaaattcatagcctacaa |
105 |
Q |
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| T |
4047639 |
agtgaaatgaacaaaacaacccttaaaaataatcagatttgttattaaacttcactaattataagatttgaattctgttattaaaattcatagcctacaa |
4047540 |
T |
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| Q |
106 |
aacaagtttaccacttgtctacttagtggggatctatgtgtggttgtctcggattcttgaatttttcatgatgccgacacaattagtttttggaataaac |
205 |
Q |
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| T |
4047539 |
aacaagtttacgacttgtctacttagtggggatctatgtgtggttgtctcggattcttgaatttttcatgatgccgacacaattagtttttggaataaac |
4047440 |
T |
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| Q |
206 |
tcatcacaattatatgagttaagtcccatttctgaggtcctacactagaaacaatacgctattgtgtatgtataagtact |
285 |
Q |
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| T |
4047439 |
tcatcacaattatatgagttaagtcccatttctgaggtcctacactagaaacaatacgctattgtgtatgtataagtact |
4047360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 6 - 258
Target Start/End: Complemental strand, 4073841 - 4073585
Alignment:
| Q |
6 |
agtgagatgaacaaaacaacccttaaaa-ataatcagatttgttattaaacttcactaattat---aagatttgaattctgttattaaaattcatagcct |
101 |
Q |
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| T |
4073841 |
agtgaaatgaacaaaacaacccttaaaagagaatcagatttgttattaaacttcactaattatgtcaagatttcaaatctgttattaaaattcatagcct |
4073742 |
T |
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| Q |
102 |
acaaaacaagtttaccacttgtctacttagtggggatctatgtgtggttgtctcggattcttgaatttttcatgatgccgacacaattagtttttggaat |
201 |
Q |
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| T |
4073741 |
acaaaacaagtttaccacttgtctacttagtggggatttatgtgtggttgtctcggattcttgaatttttcatgatgccgacacaattagtttttggaat |
4073642 |
T |
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| Q |
202 |
aaactcatcacaattatatgagttaagtcccatttctgaggtcctacactagaaaca |
258 |
Q |
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| T |
4073641 |
aaactcatcacaattatataagttaggtcccatttatgaggtcctgcactagaaaca |
4073585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 6 - 309
Target Start/End: Original strand, 13940562 - 13940870
Alignment:
| Q |
6 |
agtgagatgaacaaaacaacccttaaaaataatcagatttgttattaaacttcactaattataagatttgaattctgttattaaaattcatagcctacaa |
105 |
Q |
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||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13940562 |
agtgaaatgaacaaatcaacccttaaaaataatcagatttgttattaaacttcactaattataagatttgaattctgttattaaaattcatagcctacaa |
13940661 |
T |
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| Q |
106 |
aacaagtttaccacttgtctacttagtggggatctatgtgtggttgtctcggattcttgaatttttcatgatg-----ccgacacaattagtttttggaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
13940662 |
aacaagtttaccacttgtctacttagtggggatctatgtgtggttgtctcggattcttgaatttttcatgatgccgacccgacacaattagtttttggaa |
13940761 |
T |
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| Q |
201 |
taaactcatcacaattatatgagttaagtcccatttctgaggtcctacactagaaacaatacgctattgtgtatgtataagtactcatttttaattaaac |
300 |
Q |
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|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
13940762 |
taaactcatcacaattatatgagttaggtcccatttatgaggtcctacactagaaacaatacactattgtgtatgtataagtactaatttttaattaaac |
13940861 |
T |
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| Q |
301 |
caaagtaat |
309 |
Q |
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| T |
13940862 |
caaagtaat |
13940870 |
T |
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