View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20765_low_1 (Length: 613)
Name: NF20765_low_1
Description: NF20765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20765_low_1 |
 | |
|
| [»] chr2 (5 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 564; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 7 - 613
Target Start/End: Complemental strand, 42639354 - 42638747
Alignment:
| Q |
7 |
gcaacacagagtggccatgtgcccctaacaaaggttactatggtcgtggaccgattcaactttcttggaactacaactatggaccagctggaagagacaa |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42639354 |
gcaacacagagtggccatgtgcccctaacaaaggttactatggtcgtggaccgattcaactatcttggaactacaactatggaccagctggaagagacaa |
42639255 |
T |
|
| Q |
107 |
tggttttgatggattgaactcacctgaaacagtggccaatgatcctacagtgtccttcaagacagcattatggtattggatgaataatgtgcacggtgtc |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
42639254 |
tggttttgatggattgaactcacctgaaacagtggccaatgatcctacagtgtccttcaagacagcattatggtattggatgaataacgtgcacggtgtc |
42639155 |
T |
|
| Q |
207 |
atcaaccaaggttttggtgcaaccattagagccattaatggtcgacttgaatgtgatggtgctaacccatccacagttcagactcgtgttggttactaca |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42639154 |
atcaaccaaggttttggtgcaaccattagagccattaatggtcgacttgaatgtgatggtgctaacccatccacagttcagactcgtgttggttactaca |
42639055 |
T |
|
| Q |
307 |
ctcaatattgtagtgagttgggtgttgctcctggtgataaccttacttgctaagctagctagccataca----atacttggtatatatatttgaataaat |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
42639054 |
ctcaatattgtagtgagttgggtgttgctcctggtgataaccttacttgctaagctagctagccatacaatatatacttagtatatatatttgaataaat |
42638955 |
T |
|
| Q |
403 |
gatatcataatgttggactcatgaaaatgatatcataatacatgtatacacacaattctttataggaaaaataatgtatacacaattcaatataagccat |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42638954 |
gatatcataatgttggactcatgaaaatgatatcataatacatgtatacacacaattctttataggaaaaataatgtatacacaattcaatataagccat |
42638855 |
T |
|
| Q |
503 |
actcaatcacaccaacttaatgattatattgatattactttattaaaatcatagattgtttcaacaactaatagcgtctgttcagcttgtgaggttgtgg |
602 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
42638854 |
actcaatcacaccaacttaatgattatattgatattact---ttaaaatcatagattgtttcaacaactaatagcgtctattcagcttgtgaggttgtgg |
42638758 |
T |
|
| Q |
603 |
aatgatttcac |
613 |
Q |
| |
|
||||||||||| |
|
|
| T |
42638757 |
aatgatttcac |
42638747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 6 - 378
Target Start/End: Complemental strand, 42634278 - 42633903
Alignment:
| Q |
6 |
agcaacacagagtggccatgtgcccctaacaaaggttactatggtcgtggaccgattcaactttcttggaactacaactatggaccagctggaagagaca |
105 |
Q |
| |
|
||||||||||||| || ||||||||||||||||| |||||||| ||||||||||||||| | |||||||||| || || ||||||||||||| |||| |
|
|
| T |
42634278 |
agcaacacagagtacccgtgtgcccctaacaaaggatactatggccgtggaccgattcaattatcttggaactttaattacggaccagctggaaaggaca |
42634179 |
T |
|
| Q |
106 |
atggttttgatggattgaactcacctgaaacagtggccaatgatcctacagtgtccttcaagacagcattatggtattggatgaataatgtgcacggtgt |
205 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
42634178 |
gtggttttgatgaattgaactctcctgaaacagtggccaatgatcctttagtgtccttcaagacagcattatggtattggatgaatcatgtgcacaatgt |
42634079 |
T |
|
| Q |
206 |
catcaac---caaggttttggtgcaaccattagagccattaatggtcgacttgaatgtgatggtgctaacccatccacagttcagactcgtgttggttac |
302 |
Q |
| |
|
||| ||| ||||| ||||||||||| ||||||||||||||||||||||||||||||| |||| | |||| ||||||| || ||||||||| |||| |
|
|
| T |
42634078 |
catgaaccaacaaggctttggtgcaacggttagagccattaatggtcgacttgaatgtgacggtgttgaccccaacacagttaaggctcgtgttgattac |
42633979 |
T |
|
| Q |
303 |
tacactcaatattgtagtgagttgggtgttgctcctggtgataaccttacttgctaagctagctagccatacaata |
378 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||||| |||| |||||||||||| | |||||||||| |
|
|
| T |
42633978 |
tacactcaatattgtagtcaactgggtgttgctcctggtgataagcttaactgctaagctagcaatccatacaata |
42633903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 211 - 378
Target Start/End: Complemental strand, 42628551 - 42628384
Alignment:
| Q |
211 |
accaaggttttggtgcaaccattagagccattaatggtcgacttgaatgtgatggtgctaacccatccacagttcagactcgtgttggttactacactca |
310 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||| ||||||||| |
|
|
| T |
42628551 |
accaaggctttggtgcaaccactagagccattaatggtcgacttgaatgtgatggtgctaagccaactacagttcagactcgtgttggttgctacactca |
42628452 |
T |
|
| Q |
311 |
atattgtagtgagttgggtgttgctcctggtgataaccttacttgctaagctagctagccatacaata |
378 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||| ||||||| |||||||||| | |||||||||| |
|
|
| T |
42628451 |
atattgtagtcaattgggtgttgctcctggtgataagcttactttctaagctagcaatccatacaata |
42628384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 102 - 152
Target Start/End: Complemental strand, 42628638 - 42628588
Alignment:
| Q |
102 |
gacaatggttttgatggattgaactcacctgaaacagtggccaatgatcct |
152 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
42628638 |
gacaatggttctgatggattgaactctcctgaaacagtggccaatgatcct |
42628588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 42628694 - 42628651
Alignment:
| Q |
22 |
catgtgcccctaacaaaggttactatggtcgtggaccgattcaa |
65 |
Q |
| |
|
||||||||||||||||||| | ||||||| |||||||||||||| |
|
|
| T |
42628694 |
catgtgcccctaacaaagggttctatggttgtggaccgattcaa |
42628651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University