View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20765_low_10 (Length: 327)
Name: NF20765_low_10
Description: NF20765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20765_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 91 - 301
Target Start/End: Original strand, 8144084 - 8144294
Alignment:
| Q |
91 |
caatccattacggttccacacatcaaacaatgaatgtcccatcaactgggatccaaatacatcttggtaaaacagcttctaggagctcataaactccgat |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
8144084 |
caatccattacggttccacacatcaaacaatgaatgtcccatcaactgggatccaaatacttcttggtaaaacagcttctaggagctcataaactccgat |
8144183 |
T |
|
| Q |
191 |
cataagatctggtaacattctctcccaaattgtcccataagcacttgcaacagtagacaagccaaaataatccaaacataagcatttccaaacagccccc |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8144184 |
cataagatctggtaacattctctcccaaattgtcccataagcacttgcaacagcagacaagccaaaataatccaaacataagcatttccaaacagccccc |
8144283 |
T |
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| Q |
291 |
ctaataatgag |
301 |
Q |
| |
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||||||||||| |
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| T |
8144284 |
ctaataatgag |
8144294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 134 - 301
Target Start/End: Original strand, 8150348 - 8150515
Alignment:
| Q |
134 |
aactgggatccaaatacatcttggtaaaacagcttctaggagctcataaactccgatcataagatctggtaacattctctcccaaattgtcccataagca |
233 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8150348 |
aactgggatccaaatacttcttggtaaaacagcttctaggagctcataaactccgatcataagatctggtaacattctctcccaaattgtcccataagca |
8150447 |
T |
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| Q |
234 |
cttgcaacagtagacaagccaaaataatccaaacataagcatttccaaacagcccccctaataatgag |
301 |
Q |
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| T |
8150448 |
cttgcaacagcagacaagccaaaataatccaaacataagcatttccaaacagcccccctaataatgag |
8150515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 134 - 301
Target Start/End: Original strand, 8154972 - 8155139
Alignment:
| Q |
134 |
aactgggatccaaatacatcttggtaaaacagcttctaggagctcataaactccgatcataagatctggtaacattctctcccaaattgtcccataagca |
233 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8154972 |
aactgggatccaaatacttcttggtaaaacagcttctaggagctcataaactccgatcataagatctggtaacattctctcccaaattgtcccataagca |
8155071 |
T |
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| Q |
234 |
cttgcaacagtagacaagccaaaataatccaaacataagcatttccaaacagcccccctaataatgag |
301 |
Q |
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| T |
8155072 |
cttgcaacagcagacaagccaaaataatccaaacataagcatttccaaacagcccccctaataatgag |
8155139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 93 - 290
Target Start/End: Original strand, 8176746 - 8176943
Alignment:
| Q |
93 |
atccattacggttccacacatcaaacaatgaatgtcccatcaactgggatccaaatacatcttggtaaaacagcttctaggagctcataaactccgatca |
192 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| |||||||||| || ||||||||||||||||||| ||||||||||| ||| ||||| |
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| T |
8176746 |
atccattacggttccacacaccaaacaatgaatgtcccatcaacagggatccaaacacctcttggtaaaacagcttcttggagctcataagctctgatca |
8176845 |
T |
|
| Q |
193 |
taagatctggtaacattctctcccaaattgtcccataagcacttgcaacagtagacaagccaaaataatccaaacataagcatttccaaacagccccc |
290 |
Q |
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||| ||||||| | |||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
8176846 |
taatatctggtcatattctctcccaaatagtcccataagcacttgcaacagtagataaggcaaaataatccaaacataagccattccaaacagccccc |
8176943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 95 - 290
Target Start/End: Original strand, 8170711 - 8170893
Alignment:
| Q |
95 |
ccattacggttccacacatcaaacaatgaatgtcccatcaactgggatccaaatacatcttggtaaaacagcttctaggagctcataaactccgatcata |
194 |
Q |
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|||||| ||||||||| ||||||||||||||||||| ||||| || ||||||| | |||||||||||||| |||||||||||||||| ||| ||||||| |
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| T |
8170711 |
ccattatggttccacatatcaaacaatgaatgtcccgtcaacaaggttccaaatgcctcttggtaaaacagattctaggagctcataagctctgatcata |
8170810 |
T |
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| Q |
195 |
agatctggtaacattctctcccaaattgtcccataagcacttgcaacagtagacaagccaaaataatccaaacataagcatttccaaacagccccc |
290 |
Q |
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||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||| |||||||| ||||||||||||||| |
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| T |
8170811 |
-------------ttctctcccaaatagtcccataagcacttgcaacagtagataagccagaataatccatacataagccattccaaacagccccc |
8170893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 301
Target Start/End: Original strand, 8182477 - 8182528
Alignment:
| Q |
249 |
aagccaaaataatccaaacataagcatttccaaacagcccccctaataatgag |
301 |
Q |
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||||||||||||||||||||||| | |||||||||| ||||||||||||||| |
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| T |
8182477 |
aagccaaaataatccaaacataaaccattccaaacag-ccccctaataatgag |
8182528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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