View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20765_low_2 (Length: 611)
Name: NF20765_low_2
Description: NF20765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20765_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 213 - 519
Target Start/End: Original strand, 48129368 - 48129674
Alignment:
| Q |
213 |
gggggttgaagaggaaagcaaacatatagttaagtatttgaaaattgtaggtctcccaatgaagttggaaaatcatgatgttgaggaaatgtggaatatc |
312 |
Q |
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| T |
48129368 |
gggggttgaagaggaaagcaaacatatagttaagtatttgaaaattgtaggtctcccaatgaagttggaaaatcatgatgttgaggaaatgtggaatatc |
48129467 |
T |
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| Q |
313 |
ttaaagaatttggcactcggaaaataaaagagaagtatattaggtgaactctatggaagaagaacctcaacattcagagatgatatcttcaaggaaagga |
412 |
Q |
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| T |
48129468 |
ttaaagaatttggcactcgaaaaataaaagagaagtatattaggtgaactctatggaagaagaacctcaacattcagagatgatatcttcaaggaaagga |
48129567 |
T |
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| Q |
413 |
cattcctggaaattgtagaaaaatagtgttagaacaatatagtaacattgatcatgtaataatgcaaagaaaacaaaacataaagtagtattggatacca |
512 |
Q |
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| T |
48129568 |
cattcctggaaattgtagaaaaatagtgttagaacaatatagtaacattgatcatgtaataatgcaaagaaaaaaaaacataaagtagtattggatacca |
48129667 |
T |
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| Q |
513 |
aatactc |
519 |
Q |
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| T |
48129668 |
aatactc |
48129674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 48129200 - 48129248
Alignment:
| Q |
43 |
gagggaagatcaaactgcataatgtaattcaaacaaatttattcacgtag |
92 |
Q |
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| T |
48129200 |
gagggaagatcac-ctgcataatgtaattcaaacaaatttattcacgtag |
48129248 |
T |
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