View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20765_low_5 (Length: 465)
Name: NF20765_low_5
Description: NF20765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20765_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 450
Target Start/End: Original strand, 10887894 - 10888345
Alignment:
| Q |
1 |
agcttctttggcacgactcctccggtcaattttgcagaaatgtcgacaacttcgtcttcatcatcatcgtaatgaaagatgaaggcagtgccgaaaaaag |
100 |
Q |
| |
|
|||||||| ||||| ||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
10887894 |
agcttcttcggcacaactcctccggtgggttttgcagaattgtcgactacttcgtcttcatcatcatcgtaatgaatgatgaaggcagtgccgaagaaag |
10887993 |
T |
|
| Q |
101 |
caataaggtagacgaaggaagcgatgagggaaactacagcaacaatctcagagactgtgaggacgtggagaggtgtagaggttcggatcttttcacgcca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
10887994 |
caataaggtagacgaaggaagcgatgagggaaactacagcaacaatctcagagactgtgaggatgtggagaggtgtagaggttcggatcttttcacgcca |
10888093 |
T |
|
| Q |
201 |
cctgttaagaagaaagtacgcggcggagaagaagagaccaaagaaaacagcgtttgttaaatacagtgaagaagaaggttgttgtgactgtgaatcctgc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10888094 |
cctgttaagaagaaagtacgcggcggagaagaagagaccaaagaaaacagcgtttgttaaatacagtgaagaagaaggttgttgtgactgtgaatcctgc |
10888193 |
T |
|
| Q |
301 |
tgctgcctttggttcttcttctcatttttgcctattttctgctgaacgtcca--nnnnnnnnnnnnnnnnnnntggttattaagtgaaggatttgaaatc |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
10888194 |
tgctgcctttggttcttcttctcatttttgcttattttctgctgaacgtccatctctctctctctctttctcttggttattaagtgaaggatttgaaatc |
10888293 |
T |
|
| Q |
399 |
cgaaaatggaaaaagaaaggagaaaaaggagttcaggttaggggatgattga |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10888294 |
cgaaaatggaaaaagaaaggagaaaaaggagttcaggttaggggatgattga |
10888345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 55 - 348
Target Start/End: Complemental strand, 10866426 - 10866148
Alignment:
| Q |
55 |
tcttcatcatcatcgtaatgaaagatgaaggcagtgccgaaaaaagcaataaggtagacgaaggaagcgatgagggaaactacagcaacaatctcagaga |
154 |
Q |
| |
|
||||| || ||||||||||||| |||||||||| ||||||| |||| ||||||||||| |||||||||||||||||||| | ||| | ||||||||||| |
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|
| T |
10866426 |
tcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagaga |
10866327 |
T |
|
| Q |
155 |
ctgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttaagaagaaagtacgcggcggagaagaagagaccaaagaaaacagcgtt |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||| | || |
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|
| T |
10866326 |
ttgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatt |
10866227 |
T |
|
| Q |
255 |
tgttaaatacagtgaagaagaaggttgttgtgactgtgaatcctgctgctgcctttggttcttcttctcatttttgcctattttctgctgaacg |
348 |
Q |
| |
|
|||||| |||| || |||||||||||||| ||||| | |||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
10866226 |
tgttaagtaca---------------gtattgactgtgaatcctcctgcttcttttggttcttcttctcatttttgcttattttctgctgaacg |
10866148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 55 - 348
Target Start/End: Original strand, 10873879 - 10874157
Alignment:
| Q |
55 |
tcttcatcatcatcgtaatgaaagatgaaggcagtgccgaaaaaagcaataaggtagacgaaggaagcgatgagggaaactacagcaacaatctcagaga |
154 |
Q |
| |
|
||||| || ||||||||||||| |||||||||| ||||||| |||| ||||||||||| |||||||||||||||||||| | ||| | ||||||||||| |
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|
| T |
10873879 |
tcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagaga |
10873978 |
T |
|
| Q |
155 |
ctgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttaagaagaaagtacgcggcggagaagaagagaccaaagaaaacagcgtt |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||| | || |
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|
| T |
10873979 |
ttgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatt |
10874078 |
T |
|
| Q |
255 |
tgttaaatacagtgaagaagaaggttgttgtgactgtgaatcctgctgctgcctttggttcttcttctcatttttgcctattttctgctgaacg |
348 |
Q |
| |
|
|||||| |||| || |||||||||||||| ||||| | |||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
10874079 |
tgttaagtaca---------------gtattgactgtgaatcctcctgcttcttttggttcttcttctcatttttgcttattttctgctgaacg |
10874157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 55 - 348
Target Start/End: Original strand, 10878950 - 10879228
Alignment:
| Q |
55 |
tcttcatcatcatcgtaatgaaagatgaaggcagtgccgaaaaaagcaataaggtagacgaaggaagcgatgagggaaactacagcaacaatctcagaga |
154 |
Q |
| |
|
||||| || ||||||||||||| |||||||||| ||||||| |||| ||||||||||| |||||||||||||||||||| | ||| | ||||||||||| |
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|
| T |
10878950 |
tcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagaga |
10879049 |
T |
|
| Q |
155 |
ctgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttaagaagaaagtacgcggcggagaagaagagaccaaagaaaacagcgtt |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||| | || |
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|
| T |
10879050 |
ttgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatt |
10879149 |
T |
|
| Q |
255 |
tgttaaatacagtgaagaagaaggttgttgtgactgtgaatcctgctgctgcctttggttcttcttctcatttttgcctattttctgctgaacg |
348 |
Q |
| |
|
|||||| |||| || |||||||||||||| ||||| | |||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
10879150 |
tgttaagtaca---------------gtattgactgtgaatcctcctgcttcttttggttcttcttctcatttttgcttattttctgctgaacg |
10879228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 55 - 348
Target Start/End: Original strand, 10884021 - 10884299
Alignment:
| Q |
55 |
tcttcatcatcatcgtaatgaaagatgaaggcagtgccgaaaaaagcaataaggtagacgaaggaagcgatgagggaaactacagcaacaatctcagaga |
154 |
Q |
| |
|
||||| || ||||||||||||| |||||||||| ||||||| |||| ||||||||||| |||||||||||||||||||| | ||| | ||||||||||| |
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|
| T |
10884021 |
tcttcttcttcatcgtaatgaaggatgaaggcaatgccgaagaaagtgataaggtagacaaaggaagcgatgagggaaacaagagcgagaatctcagaga |
10884120 |
T |
|
| Q |
155 |
ctgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttaagaagaaagtacgcggcggagaagaagagaccaaagaaaacagcgtt |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||| | || |
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|
| T |
10884121 |
ttgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttgagaagaaagtaggcgacggagaagaagagaccaaagaaaacaacatt |
10884220 |
T |
|
| Q |
255 |
tgttaaatacagtgaagaagaaggttgttgtgactgtgaatcctgctgctgcctttggttcttcttctcatttttgcctattttctgctgaacg |
348 |
Q |
| |
|
|||||| |||| || |||||||||||||| ||||| | |||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
10884221 |
tgttaagtaca---------------gtattgactgtgaatcctcctgcttcttttggttcttcttctcatttttgcttattttctgctgaacg |
10884299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 34 - 274
Target Start/End: Complemental strand, 39676020 - 39675780
Alignment:
| Q |
34 |
gcagaaatgtcgacaacttcgtcttcatcatcatcgtaatgaaagatgaaggcagtgccgaaaaaagcaataaggtagacgaaggaagcgatgagggaaa |
133 |
Q |
| |
|
|||| |||||| ||||||| ||||| || ||||||||||||| |||||||||| ||| || ||||| ||||||||| | | |||| |||||||||| |
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|
| T |
39676020 |
gcagcaatgtcagcaacttcatcttcttcttcatcgtaatgaaggatgaaggcaacgccaaagaaagccgtaaggtagataaggcaagcaatgagggaaa |
39675921 |
T |
|
| Q |
134 |
ctacagcaacaatctcagagactgtgaggacgtggagaggtgtagaggttcggatcttttcacgccacctgttaagaagaaagtacgcggcggagaagaa |
233 |
Q |
| |
|
||| ||||| |||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||| |
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|
| T |
39675920 |
ctagagcaagaatctcggagattgtgaggacatggagaggtgtagaggttcggatcttttcacgccaccggttaagaagaaagtatgcgacggagaagaa |
39675821 |
T |
|
| Q |
234 |
gagaccaaagaaaacagcgtttgttaaatacagtgaagaag |
274 |
Q |
| |
|
|||||| ||||||| || ||||||||| || |||||||||| |
|
|
| T |
39675820 |
gagaccgaagaaaaaagtgtttgttaagtaaagtgaagaag |
39675780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 79 - 272
Target Start/End: Complemental strand, 10045968 - 10045775
Alignment:
| Q |
79 |
atgaaggcagtgccgaaaaaagcaataaggtagacgaaggaagcgatgagggaaactacagcaacaatctcagagactgtgaggacgtggagaggtgtag |
178 |
Q |
| |
|
|||||| || ||||||| ||||| |||||||| | |||||||| ||||||||||| ||| | |||||||||||| |||||| || || |||||||| | |
|
|
| T |
10045968 |
atgaagccaatgccgaagaaagccataaggtaaataaaggaagctatgagggaaacaacaccggcaatctcagagattgtgagaacatgaagaggtgtgg |
10045869 |
T |
|
| Q |
179 |
aggttcggatcttttcacgccacctgttaagaagaaagtacgcggcggagaagaagagaccaaagaaaacagcgtttgttaaatacagtgaaga |
272 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||| |||||| |||||||||| ||||| ||||||| ||||||||||| || |||||||| |
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|
| T |
10045868 |
aggttcggatcttctcacgccacctgtgaagaagaaaatacgcgacggagaagaaaagaccgaagaaaattgcgtttgttaagtagagtgaaga |
10045775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 411
Target Start/End: Complemental strand, 10866127 - 10866088
Alignment:
| Q |
372 |
tggttattaagtgaaggatttgaaatccgaaaatggaaaa |
411 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
10866127 |
tggttattaagtgaaggatttgaaatccaataatggaaaa |
10866088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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