View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20765_low_6 (Length: 386)
Name: NF20765_low_6
Description: NF20765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20765_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 20 - 261
Target Start/End: Complemental strand, 7591913 - 7591670
Alignment:
| Q |
20 |
cttccacaaaaggtgatgctcaatcagatttgttgtacagaaaacctacagaatgtgatagaatagaatccactaatggtccaccaaaaatcttaagcca |
119 |
Q |
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| T |
7591913 |
cttccacaaaaggtgatgctcaatcagatttgttgtactgaaaacctacagaatgtgatagaatagaatccaccaatggtccaccaaaaatcttaagcca |
7591814 |
T |
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| Q |
120 |
ccacacactgataggaccaattataccaccatggcccccacatgcaaaattcaattgatttgtacagtgccaaaatcaattaa--ggggccaccgaccta |
217 |
Q |
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| T |
7591813 |
ccacacactgataggaccaattataccaccatggcccccacatgcaaaattcaattgatttgtacagtgccaaaatcaattaaggggggccaccgacgta |
7591714 |
T |
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| Q |
218 |
gtgctaagttatcaatatttcagtttcttaaacaacaagactta |
261 |
Q |
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| T |
7591713 |
gtgctaagttatcaatatttcagtttcttaaataacaagactta |
7591670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 258 - 375
Target Start/End: Complemental strand, 7591342 - 7591225
Alignment:
| Q |
258 |
cttaaggtacatttttagattttcatatgattcttgattaaaactatattttctttcactatataaacttttgaagagaccatcacaaaggatcaacgtc |
357 |
Q |
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| T |
7591342 |
cttaaggtacatttttagattttcatatgattcttaattaaaactatattttctttcactaaataaacttttgaagagaccatcacgaaggatcaacgtc |
7591243 |
T |
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| Q |
358 |
caacataaccatattcat |
375 |
Q |
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| T |
7591242 |
caacataaccatattcat |
7591225 |
T |
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