View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20765_low_7 (Length: 333)
Name: NF20765_low_7
Description: NF20765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20765_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 42638768 - 42638452
Alignment:
| Q |
1 |
tgaggttgtggaatgatttcacatttcacacgtttgacaaactggttacgagatatggaaaggggaannnnnnnngcaaggaatttacttccaaaattcc |
100 |
Q |
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| T |
42638768 |
tgaggttgtggaatgatttcacatttcacacgtttgacaaactggttacgagatatggaaaggggaattttttttgcaaggaatttacttccaaaattcc |
42638669 |
T |
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| Q |
101 |
cattctatgccttaattaggcatacacaaactatactccatctaatacatacctttgactttgaacatcccaaaagaaaaaagttttgcaatttgcacct |
200 |
Q |
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| T |
42638668 |
cattctatgcattaattaggcatacacaaactatactccatctaatacatacctttgactttgaacatcccaaaagaaaaaagttttgcaatttgcaact |
42638569 |
T |
|
| Q |
201 |
ccaaagtccaaacccacatttagagaggtggtggaatccgaagaagcgttggaaaaggacacttaagggtgtcaaattgagctcaactatggtgatgaca |
300 |
Q |
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| T |
42638568 |
ccaaagtccaaacccacatttagagagatggtggaatctgaagaagcgttggaaaaggacacttaagggtgtcaaattgagctcaactatggtgatgata |
42638469 |
T |
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| Q |
301 |
aaatgttgtttggtttg |
317 |
Q |
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| T |
42638468 |
aaatgttgtttggtttg |
42638452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 221 - 317
Target Start/End: Complemental strand, 36276141 - 36276045
Alignment:
| Q |
221 |
tagagaggtggtggaatccgaagaagcgttggaaaaggacacttaagggtgtcaaattgagctcaactatggtgatgacaaaatgttgtttggtttg |
317 |
Q |
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| T |
36276141 |
tagagaggtggtggaatccgaagaagtgttggaaaaggacatttaagggtgccaaattaggctcagctatggtgatgacatgatgatgtttggtttg |
36276045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 126
Target Start/End: Complemental strand, 42631110 - 42631074
Alignment:
| Q |
90 |
tccaaaattcccattctatgccttaattaggcataca |
126 |
Q |
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| T |
42631110 |
tccaaacttcccattccatgccttaattaggcataca |
42631074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 221 - 317
Target Start/End: Original strand, 28171317 - 28171412
Alignment:
| Q |
221 |
tagagaggtggtggaatccgaagaagcgttggaaaaggacacttaagggtgtcaaattgagctcaactatggtgatgacaaaatgttgtttggtttg |
317 |
Q |
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| T |
28171317 |
tagagaggtggtggaattcgaaaaagcattggaaaagaaca-ttatgggtgtcaaattgggctcaactatggtgatgacaagacgatgtttggtttg |
28171412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 317
Target Start/End: Original strand, 20719930 - 20720001
Alignment:
| Q |
246 |
gcgttggaaaaggacacttaagggtgtcaaattgagctcaactatggtgatgacaaaatgttgtttggtttg |
317 |
Q |
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| T |
20719930 |
gcgttggaaaaagacgcttagtgctgtcaaattgggctcaactatggtgacgacaagatgttgtttggtttg |
20720001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 221 - 317
Target Start/End: Complemental strand, 5221809 - 5221714
Alignment:
| Q |
221 |
tagagaggtggtggaatccgaagaagcgttggaaaaggacacttaagggtgtcaaattgagctcaactatggtgatgacaaaatgttgtttggtttg |
317 |
Q |
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|||| |||||||||||||||||||||||| |||||| |||| | ||||||| ||||| ||| | ||| ||||||||||| ||| ||||||||||| |
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| T |
5221809 |
tagataggtggtggaatccgaagaagcgtcggaaaaagacattggtgggtgtc-aattgggctaagctagggtgatgacaagatgatgtttggtttg |
5221714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 255
Target Start/End: Original strand, 2877746 - 2877780
Alignment:
| Q |
221 |
tagagaggtggtggaatccgaagaagcgttggaaa |
255 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
2877746 |
tagagaggtggtggaatccgaagaagcgttggaaa |
2877780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 298
Target Start/End: Complemental strand, 36962588 - 36962510
Alignment:
| Q |
221 |
tagagaggtggtggaatccgaagaagcgttggaaaaggacacttaa-gggtgtcaaattgagctcaactatggtgatga |
298 |
Q |
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||||||||||||| |||||||| ||||||||| |||||||| |||| || || ||||||| |||| |||||| ||||| |
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| T |
36962588 |
tagagaggtggtgcaatccgaaaaagcgttgggaaaggacatttaatggatgccaaattgggctcggctatggagatga |
36962510 |
T |
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