View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20765_low_8 (Length: 330)

Name: NF20765_low_8
Description: NF20765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20765_low_8
NF20765_low_8
[»] chr5 (22 HSPs)
chr5 (19-317)||(30243127-30243425)
chr5 (19-321)||(30714185-30714487)
chr5 (19-317)||(30339280-30339578)
chr5 (19-314)||(4380708-4381003)
chr5 (19-321)||(30434872-30435174)
chr5 (19-321)||(30399115-30399417)
chr5 (21-317)||(30482456-30482752)
chr5 (55-321)||(29871272-29871538)
chr5 (19-321)||(30748693-30748995)
chr5 (60-321)||(30677919-30678180)
chr5 (19-317)||(29852349-29852647)
chr5 (19-321)||(30059407-30059709)
chr5 (19-319)||(30205560-30205863)
chr5 (182-271)||(17418970-17419059)
chr5 (185-271)||(29709731-29709817)
chr5 (138-271)||(30522432-30522565)
chr5 (138-271)||(30562772-30562905)
chr5 (54-203)||(17982005-17982152)
chr5 (54-115)||(29709866-29709927)
chr5 (146-251)||(30474552-30474657)
chr5 (63-99)||(30203244-30203280)
chr5 (136-190)||(30203318-30203372)
[»] chr4 (2 HSPs)
chr4 (19-321)||(20297354-20297656)
chr4 (140-187)||(52351128-52351175)
[»] chr7 (1 HSPs)
chr7 (19-319)||(26706382-26706682)
[»] chr1 (2 HSPs)
chr1 (30-203)||(7582597-7582770)
chr1 (30-203)||(7098476-7098649)


Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 317
Target Start/End: Complemental strand, 30243425 - 30243127
Alignment:
Q  19 acatggcagtccaagtttagggcaatcaatgattgtcaaagtagaaagacaaggaaacatctcccctctttccactttcaataacccctctatgtttcgt 118  Q
    |||||||||||||||||||||||| |    |||   |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  30243425 acatggcagtccaagtttagggcatttccagatatccaaactagaaagacaaggaaacatctcccctctttccactttcaataacccctctatgtttggt 30243326  T
Q  119 agacaagataattggagtacctccagagatgggaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttcagattattcataaaat 218  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||         
T  30243325 agacaagataattggagtacctctagagatgggaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttcagattatccatttcga 30243226  T
Q  219 ataattccagttttttcagagatggtagtttactaagtgacggaagccgcacaatttcgttgcaattccaaagttgaagagaaattaaattactaagaa 317  Q
    |||||||||||||||| ||| |||||||||||| |||| |||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||    
T  30243225 ataattccagtttttttagatatggtagtttaccaagtaacggaagccgcacaattttgttgcaattccgaagttcaagagaaattaaattactaagaa 30243127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 321
Target Start/End: Complemental strand, 30714487 - 30714185
Alignment:
Q  19 acatggcagtccaagtttagggcaatcaat-gattgtcaaagtagaaagacaaggaaacatctcccctctttccactttcaataacccctctatgtttcg 117  Q
    ||||||||||||||||||||||||| |||| ||||  |||  |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  30714487 acatggcagtccaagtttagggcaa-caatcgattaccaatttagaaagagaaggaaacatctcccctctttccactttcaataaccccactatgtttcg 30714389  T
Q  118 tagacaagataattggagtacctccagagatgggaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttcagattattcataaaa 217  Q
    |||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |    
T  30714388 tagacaagataattcgagtatctccagagaggggaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttcagattattgatacca 30714289  T
Q  218 tataattccagttttttcagagatggtagtttactaagtgacggaagccgcacaatttcgttgcaattccaaagttgaagagaaattaaattactaagaa 317  Q
    ||||||  ||||||||| |||||||||||||||| |||| ||||||||||||||||||  |||||||    ||||  |||||||| ||||||||||||||    
T  30714288 tataatctcagtttttttagagatggtagtttaccaagtaacggaagccgcacaattttcttgcaatggagaagtacaagagaaactaaattactaagaa 30714189  T
Q  318 taat 321  Q
    ||||    
T  30714188 taat 30714185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 19 - 317
Target Start/End: Complemental strand, 30339578 - 30339280
Alignment:
Q  19 acatggcagtccaagtttagggcaatcaatgattgtcaaagtagaaagacaaggaaacatctcccctctttccactttcaataacccctctatgtttcgt 118  Q
    |||||||||||||| |||||||||||    |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  30339578 acatggcagtccaattttagggcaataggagattgtcaagttagaaagacaaggaaacatctcccctctttccactttcaataacccctctatgtttggt 30339479  T
Q  119 agacaagataattggagtacctccagagatgggaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttcagattattcataaaat 218  Q
    || |    ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  30339478 aggcgttgtaagtagagtacctccagagatgggaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttcagattattcatacgat 30339379  T
Q  219 ataattccagttttttcagagatggtagtttactaagtgacggaagccgcacaatttcgttgcaattccaaagttgaagagaaattaaattactaagaa 317  Q
    ||| |   || ||||| |||||||||||||||| |||| || ||||| ||||||||| ||||||||||||||| | |||||||||||||||||||||||    
T  30339378 atactctaagattttttagagatggtagtttaccaagtaactgaagcagcacaattttgttgcaattccaaagattaagagaaattaaattactaagaa 30339280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 19 - 314
Target Start/End: Original strand, 4380708 - 4381003
Alignment:
Q  19 acatggcagtccaagtttagggcaatcaatgattgtcaaagtagaaagacaaggaaacatctcccctctttccactttcaataacccctctatgtttcgt 118  Q
    ||||||||||||||||||||||||||    |||   |||  |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||    
T  4380708 acatggcagtccaagtttagggcaattctagatatccaagttagaaagacaaggaaacaactcccctctttccactttcaataacccctttatgtttggt 4380807  T
Q  119 agacaagataattggagtacctccagagatgggaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttcagattattcataaaat 218  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||  |     
T  4380808 agacaatataattcgagtacctccagagatgggaaaaccctcacctccataccatcctcaaattcatcatcatccaagtatttcagattatccgtacgaa 4380907  T
Q  219 ataattccagttttttcagagatggtagtttactaagtgacggaagccgcacaatttcgttgcaattccaaagttgaagagaaattaaattactaa 314  Q
    ||||||||| |||||| ||||||| |||||||| |||||||||||||||||||| || |||||||   ||||||| ||||||||||||||||||||    
T  4380908 ataattccaatttttttagagatgttagtttaccaagtgacggaagccgcacaactttgttgcaaacacaaagtttaagagaaattaaattactaa 4381003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 19 - 321
Target Start/End: Original strand, 30434872 - 30435174
Alignment:
Q  19 acatggcagtccaagtttagggcaatcaatgattgtcaaagtagaaagacaaggaaacatctcccctctttccactttcaataacccctctatgtttcgt 118  Q
    |||||||||||||||||||||||| |    |||   |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  30434872 acatggcagtccaagtttagggcatttccagatatccaaactagaaagacaaggaaacatctcccctctttccactttcaataacccctctatgtttggt 30434971  T
Q  119 agacaagataattggagtacctccagagatgggaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttcagattattcataaaat 218  Q
    |  | |  ||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  30434972 aacccatgtaattcgagtacctccaaagatgggaaagccctcacctccataccatcctcagattcatcatcatccaagtatttcagattattcataccat 30435071  T
Q  219 ataattccagttttttcagagatggtagtttactaagtgacggaagccgcacaatttcgttgcaattccaaagttgaagagaaattaaattactaagaat 318  Q
    ||| |   |||||||| |||||||||||||||| || | |||||||||||||||||| |||||||| || ||||| ||||||||||||||||||||||||    
T  30435072 atactctaagtttttttagagatggtagtttaccaaataacggaagccgcacaattttgttgcaatccccaagtttaagagaaattaaattactaagaat 30435171  T
Q  319 aat 321  Q
    |||    
T  30435172 aat 30435174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 19 - 321
Target Start/End: Original strand, 30399115 - 30399417
Alignment:
Q  19 acatggcagtccaagtttagggcaatcaatgattgtcaaagtagaaagacaaggaaacatctcccctctttccactttcaataacccctctatgtttcgt 118  Q
    |||||||| |||||||||||||||| |  ||||| ||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  30399115 acatggcactccaagtttagggcaagctgtgattctcaactcagaaagacaaggaaacatctcccctctttccactttcaataacccctctatgtttggt 30399214  T
Q  119 agacaagataattggagtacctccagagatgggaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttcagattattcataaaat 218  Q
    || ||   ||| |||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||  |     
T  30399215 aggcatagtaaatggagttcctccagagatgggaaaaccctcacctccacaccatcctgagattcatcatcatccaagtatttcagattatccatatcag 30399314  T
Q  219 ataattccagttttttcagagatggtagtttactaagtgacggaagccgcacaatttcgttgcaattccaaagttgaagagaaattaaattactaagaat 318  Q
    |||||||||||||||| ||||| |||||||||| || | || |||| ||||||| ||  |||||||||| ||||| |||||||| |||||||||||||||    
T  30399315 ataattccagtttttttagagacggtagtttaccaattaactgaagtcgcacaactttcttgcaattcccaagttcaagagaaactaaattactaagaat 30399414  T
Q  319 aat 321  Q
    |||    
T  30399415 aat 30399417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 21 - 317
Target Start/End: Original strand, 30482456 - 30482752
Alignment:
Q  21 atggcagtccaagtttagggcaatcaatgattgtcaaagta-gaaagacaaggaaacatctcccctctttccactttcaataacccctctatgtttcgta 119  Q
    ||||||||||||||||| ||||||    |||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30482456 atggcagtccaagtttatggcaatatgagatt-tccaagtaagaaagacaaggaaacatctcccctctttccactttcaataacccctctatgtttcgta 30482554  T
Q  120 gacaagataattggagtacctccagagatgggaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttcagattattcataaaata 219  Q
    |  |   ||| |||||  ||  ||||||| |||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||| |||| || |    
T  30482555 ggtatcgtaaatggagatccatcagagatcggaaaaccatcacctccacaccatcctgagattcatcatcatccaagtatttcagattatccatataaga 30482654  T
Q  220 taattccagttttttcagagatggtagtttactaagtgacggaagccgcacaatttcgttgcaattccaaagttgaagagaaattaaattactaagaa 317  Q
    ||||||||||||||| |||||||||||||||| |||| |||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||    
T  30482655 taattccagtttttttagagatggtagtttaccaagtaacggaagccgcacaattttgttgcaattccgaagttcaagagaaattaaattactaagaa 30482752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 55 - 321
Target Start/End: Original strand, 29871272 - 29871538
Alignment:
Q  55 caaagtagaaagacaaggaaacatctcccctctttccactttcaataacccctctatgtttcgtagacaagataattggagtacctccagagatgggaaa 154  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||    | |||||  |||| |||||||||||||||||    
T  29871272 caaactagaaagacaaggaaacatctcccctctttcaactttcaataaaccctctatgtttggtaacttatataatacgagttcctccagagatgggaaa 29871371  T
Q  155 accctcacctccataccatcctcagattcatcatcatccaagtatttcagattattcataaaatataattccagttttttcagagatggtagtttactaa 254  Q
    | |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| || |||||||||||||||| |||||||||||||||| ||    
T  29871372 atcctcacctccataccatcctgagattcatcatcatccaagtatttcagattatccatataagataattccagtttttttagagatggtagtttaccaa 29871471  T
Q  255 gtgacggaagccgcacaatttcgttgcaattccaaagttgaagagaaattaaattactaagaataat 321  Q
    || |||||||||||||||| | |||||||| |  ||||| |||||||||||||||||||||||||||    
T  29871472 gtaacggaagccgcacaatcttgttgcaatcctcaagtttaagagaaattaaattactaagaataat 29871538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 19 - 321
Target Start/End: Original strand, 30748693 - 30748995
Alignment:
Q  19 acatggcagtccaagtttagggcaatcaatgattgtcaaagtagaaagacaaggaaacatctcccctctttccactttcaataacccctctatgtttcgt 118  Q
    ||||||||||||||||| |||||||||   |||   |||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  30748693 acatggcagtccaagttcagggcaatcccagatatccaacttagaaagacaaggaaacatctcccctctttccactttcaataatccctctatgtttggt 30748792  T
Q  119 agacaagataattggagtacctccagagatgggaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttcagattattcataaaat 218  Q
    ||  |   ||| | |||| |||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||    
T  30748793 agggattttaagttgagttcctctagagatgggaaaacgctcacctccataccatactcagattcatcatcatccaagtatttcagattattcataccat 30748892  T
Q  219 ataattccagttttttcagagatggtagtttactaagtgacggaagccgcacaatttcgttgcaattccaaagttgaagagaaattaaattactaagaat 318  Q
    |||||   |||||||| |||||||||||||||| |||| |||||||||||||||||| ||||||| ||  ||||| ||||||||||||||||||||||||    
T  30748893 ataatcttagtttttttagagatggtagtttaccaagtaacggaagccgcacaattttgttgcaaatctcaagttcaagagaaattaaattactaagaat 30748992  T
Q  319 aat 321  Q
    |||    
T  30748993 aat 30748995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 60 - 321
Target Start/End: Complemental strand, 30678180 - 30677919
Alignment:
Q  60 tagaaagacaaggaaacatctcccctctttccactttcaataacccctctatgtttcgtagacaagataattggagtacctccagagatgggaaaaccct 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||  ||||  ||||  |||||||||||||||||||||    
T  30678180 tagaaagacaaggaaacatctcccctctttccactttcaataacccctctatgtttggtagagaatctaataagagtttctccagagatgggaaaaccct 30678081  T
Q  160 cacctccataccatcctcagattcatcatcatccaagtatttcagattattcataaaatataattccagttttttcagagatggtagtttactaagtgac 259  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||  | |||||  |||| |||| |||||||||||||||| | || ||    
T  30678080 caccttcataccatcctcagattcatcatcatccaagtatttcagattattcatacgagataatctcagtctttttagagatggtagtttaccacgtaac 30677981  T
Q  260 ggaagccgcacaatttcgttgcaattccaaagttgaagagaaattaaattactaagaataat 321  Q
    |||||||||||||||| |||||| | |  ||||| |||||||||||||||||||||||||||    
T  30677980 ggaagccgcacaattttgttgcattcctcaagttcaagagaaattaaattactaagaataat 30677919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 19 - 317
Target Start/End: Original strand, 29852349 - 29852647
Alignment:
Q  19 acatggcagtccaagtttagggcaatcaatgattgtcaaagtagaaagacaaggaaacatctcccctctttccactttcaataacccctctatgtttcgt 118  Q
    ||||||||||||||||| ||||||||    |||| ||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  29852349 acatggcagtccaagttcagggcaatatgagattttcaaattagaaagacaaggaaatatcttccctctttccactttcaataacccctctatgtttcgt 29852448  T
Q  119 agacaagataattggagtacctccagagatgggaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttcagattattcataaaat 218  Q
    || |    |||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||         
T  29852449 aggcgttgtaatagaagtatctccagagatgggaaaaccctcacctccataccatcctcagattcatcatcatctaagtatttcagattatccattttga 29852548  T
Q  219 ataattccagttttttcagagatggtagtttactaagtgacggaagccgcacaatttcgttgcaattccaaagttgaagagaaattaaattactaagaa 317  Q
    ||||| |||  ||||| ||| |||||||||||| |||| |||||||||||||||||| ||||||||||| ||||| ||||||||||||| |||||||||    
T  29852549 ataataccaacttttttagatatggtagtttacaaagtaacggaagccgcacaattttgttgcaattccgaagttcaagagaaattaaactactaagaa 29852647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 19 - 321
Target Start/End: Original strand, 30059407 - 30059709
Alignment:
Q  19 acatggcagtccaagtttagggcaatcaatgattgtcaaagtagaaagacaaggaaacatctcccctctttccactttcaataacccctctatgtttcgt 118  Q
    ||||||||||||||||||| |||| |||  |||   |||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  30059407 acatggcagtccaagtttacggcattcagagatatccaacttagaaagacaaggaaacatctcccctctttccactttcaataaaccctctatgtttggt 30059506  T
Q  119 agacaagataattggagtacctccagagatgggaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttcagattattcataaaat 218  Q
    |    | |||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||     
T  30059507 aactgatataatacgagttcctccagagatgggaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttcagattatccatataag 30059606  T
Q  219 ataattccagttttttcagagatggtagtttactaagtgacggaagccgcacaatttcgttgcaattccaaagttgaagagaaattaaattactaagaat 318  Q
    |||||||||| ||||| | |||||||||| ||| |||| || |||||||||||| ||  || |||  |  ||||| |||||||| |||||||||||||||    
T  30059607 ataattccaggttttttaaagatggtagtataccaagtaactgaagccgcacaactttcttacaacgcttaagtttaagagaaactaaattactaagaat 30059706  T
Q  319 aat 321  Q
    |||    
T  30059707 aat 30059709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 19 - 319
Target Start/End: Original strand, 30205560 - 30205863
Alignment:
Q  19 acatggcagtccaagtttagggcaatcaatgattgtcaaagtagaaagacaaggaaacatctcccctctttccactttcaataacccctctatgtttcgt 118  Q
    |||||||||||||||||||||||||     ||| || |||  ||||||||||||||||||||| ||||||||||||||||||||||| |||| |||| ||    
T  30205560 acatggcagtccaagtttagggcaaaaggagatggttaaacgagaaagacaaggaaacatctcacctctttccactttcaataacccttctaagtttggt 30205659  T
Q  119 agacaagataattggagtacctccagagatgggaaaaccctcacctccataccatcctcaga---ttcatcatcatccaagtatttcagattattcataa 215  Q
    ||      ||||  ||||||||||||||||||||||| |||| || | |||||||| | |||   ||||||||||||||||||||||| || |||||||     
T  30205660 aggatttctaatatgagtacctccagagatgggaaaatcctcgccacaataccatcttgagattcttcatcatcatccaagtatttcaaatcattcatat 30205759  T
Q  216 aatataattccagttttttcagagatggtagtttactaagtgacggaagccgcaca-atttcgttgcaattccaaagttgaagagaaattaaattactaa 314  Q
     ||  ||  | |||||||||| |||| ||||||||| || |||||||||||||||| ||||| |  ||||||||||||  ||||| || ||||||||| |    
T  30205760 tatgcaaagcgagttttttcaaagattgtagtttaccaaatgacggaagccgcacacatttc-tcacaattccaaagtacaagagcaactaaattactga 30205858  T
Q  315 gaata 319  Q
    |||||    
T  30205859 gaata 30205863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 271
Target Start/End: Complemental strand, 17419059 - 17418970
Alignment:
Q  182 tcatcatcatccaagtatttcagattattcataaaatataattccagttttttcagagatggtagtttactaagtgacggaagccgcaca 271  Q
    |||||||||||||||||||||||||| |||||  || |||||||||||  ||| |||||| ||||||||| || ||||| ||||||||||    
T  17419059 tcatcatcatccaagtatttcagatttttcatgtaagataattccagtaattttagagattgtagtttaccaaatgacgaaagccgcaca 17418970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 271
Target Start/End: Complemental strand, 29709817 - 29709731
Alignment:
Q  185 tcatcatccaagtatttcagattattcataaaatataattccagttttttcagagatggtagtttactaagtgacggaagccgcaca 271  Q
    ||||||||||||||||||||||||  ||||   ||||||||||||||||| |||||| ||||||||| || ||| ||||| ||||||    
T  29709817 tcatcatccaagtatttcagattacgcatactgtataattccagtttttttagagatagtagtttaccaaatgaaggaaggcgcaca 29709731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 271
Target Start/End: Complemental strand, 30522565 - 30522432
Alignment:
Q  138 cctccagagatgggaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttcagattattcataaaatataattccagttttttcag 237  Q
    ||||||||||||||||| |||| ||||||| ||||||    ||||| ||||||||||  || | || ||||| |||| |  ||||||  |||||||| ||    
T  30522565 cctccagagatgggaaacccctaacctccacaccatcgcttgattcttcatcatccacatactgcacattatccatataccataattggagttttttgag 30522466  T
Q  238 agatggtagtttactaagtgacggaagccgcaca 271  Q
    |||||||| ||||  |||||| ||||||||||||    
T  30522465 agatggtaatttagcaagtgatggaagccgcaca 30522432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 271
Target Start/End: Complemental strand, 30562905 - 30562772
Alignment:
Q  138 cctccagagatgggaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttcagattattcataaaatataattccagttttttcag 237  Q
    ||||||||||||||||| |||| ||||||| ||||||    ||||| ||||||||||  || | || ||||| |||| |  ||||||  |||||||| ||    
T  30562905 cctccagagatgggaaacccctaacctccacaccatcgcttgattcttcatcatccacatactgcacattatccatataccataattggagttttttgag 30562806  T
Q  238 agatggtagtttactaagtgacggaagccgcaca 271  Q
    |||||||| ||||  |||||| ||||||||||||    
T  30562805 agatggtaatttagcaagtgatggaagccgcaca 30562772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 203
Target Start/End: Original strand, 17982005 - 17982152
Alignment:
Q  54 tcaaagtagaaagacaaggaaacatctcccctctttccactttcaataacccctctatgtttcgtagacaagataattggagtacctccagagatgggaa 153  Q
    ||||| ||||||||||||||  ||| || ||||||||||||||||| |  ||||||| ||||  || |  |  ||||  ||||| |||||||||||||||    
T  17982005 tcaaaatagaaagacaagga--catttctcctctttccactttcaacagaccctctaagtttgataaattatttaatgtgagtatctccagagatgggaa 17982102  T
Q  154 aaccctcacctccataccatcctcagattcatcatcatccaagtatttca 203  Q
    |    ||| ||||| |||||  ||| ||||||||||||||||||||||||    
T  17982103 atttatcatctccacaccattttcaaattcatcatcatccaagtatttca 17982152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 29709927 - 29709866
Alignment:
Q  54 tcaaagtagaaagacaaggaaacatctcccctctttccactttcaataacccctctatgttt 115  Q
    ||||| ||||| |||||||||||| |||| |||||||||| |||| ||||||||||| ||||    
T  29709927 tcaaaatagaaggacaaggaaacacctcctctctttccacattcactaacccctctaagttt 29709866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 146 - 251
Target Start/End: Original strand, 30474552 - 30474657
Alignment:
Q  146 gatgggaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttcagattattcataaaatataattccagttttttcagagatggta 245  Q
    ||||| ||| |||||||||| | |||||| | | ||||| ||||||||| ||||| || ||||||||||    ||||||| || ||||| ||||||||||    
T  30474552 gatggaaaagccctcacctctacaccatcatgatattcagcatcatccatgtattgcatattattcataccccataattcaagcttttttagagatggta 30474651  T
Q  246 gtttac 251  Q
    ||||||    
T  30474652 gtttac 30474657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 99
Target Start/End: Original strand, 30203244 - 30203280
Alignment:
Q  63 aaagacaaggaaacatctcccctctttccactttcaa 99  Q
    |||||||||||||||||||| ||||||||||||||||    
T  30203244 aaagacaaggaaacatctcctctctttccactttcaa 30203280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 190
Target Start/End: Original strand, 30203318 - 30203372
Alignment:
Q  136 tacctccagagatgggaaaaccctcacctccataccatcctcagattcatcatca 190  Q
    |||||||| | ||||||||| |||||||||||||||||  | |||||||||||||    
T  30203318 tacctccaaatatgggaaaatcctcacctccataccattgtgagattcatcatca 30203372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 171; Significance: 8e-92; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 19 - 321
Target Start/End: Complemental strand, 20297656 - 20297354
Alignment:
Q  19 acatggcagtccaagtttagggcaatcaatgattgtcaaagtagaaagacaaggaaacatctcccctctttccactttcaataacccctctatgtttcgt 118  Q
    |||||||| ||||||||||||||| |    |||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  20297656 acatggcattccaagtttagggcatttggagattttcaacttagaaagacaaggaaacatctcccctctttccactttcaataacccctctatgttttgt 20297557  T
Q  119 agacaagataattggagtacctccagagatgggaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttcagattattcataaaat 218  Q
    |||||| |||| | |||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||| ||||  |     
T  20297556 agacaaaataagtcgagtacctccagagatgggaaaaccctcacctccctaccatcccgagattcatcatcatccaagtatttcagattatacataccag 20297457  T
Q  219 ataattccagttttttcagagatggtagtttactaagtgacggaagccgcacaatttcgttgcaattccaaagttgaagagaaattaaattactaagaat 318  Q
    ||| |  ||||||||| |||||||||||||||| || | |||||||| ||||||||||||||||||||  ||||| || ||||| |||||||||||||||    
T  20297456 atattgtcagtttttttagagatggtagtttaccaattaacggaagctgcacaatttcgttgcaattctcaagttcaaaagaaactaaattactaagaat 20297357  T
Q  319 aat 321  Q
    |||    
T  20297356 aat 20297354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 140 - 187
Target Start/End: Original strand, 52351128 - 52351175
Alignment:
Q  140 tccagagatgggaaaaccctcacctccataccatcctcagattcatca 187  Q
    |||||||||||||||||||||||| ||| |||||| | ||||||||||    
T  52351128 tccagagatgggaaaaccctcacccccacaccatcgtgagattcatca 52351175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 153; Significance: 5e-81; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 19 - 319
Target Start/End: Original strand, 26706382 - 26706682
Alignment:
Q  19 acatggcagtccaagtttagggcaatcaatgattgtcaaagtagaaagacaaggaaacatctcccctctttccactttcaataacccctctatgtttcgt 118  Q
    |||||||||||| || ||||||||||     |||||||||  ||||||||||||||||| ||  ||||||||||||||||||||||||||||||||| ||    
T  26706382 acatggcagtcctagcttagggcaatagtatattgtcaaacgagaaagacaaggaaacacctttcctctttccactttcaataacccctctatgtttggt 26706481  T
Q  119 agacaagataattggagtacctccagagatgggaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttcagattattcataaaat 218  Q
    |    | |||| |||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||  |||| ||     
T  26706482 aactcatataagtggagtaccttcagagatgggaaaaccctcacctccatgccatcctgagattcatcatcatccaagtatttcagattaaccatagaag 26706581  T
Q  219 ataattccagttttttcagagatggtagtttactaagtgacggaagccgcacaatttcgttgcaattccaaagttgaagagaaattaaattactaagaat 318  Q
    |||||||||||||||  |||||||||||||||| |||| ||||||||||||||| ||  ||||||| || ||||| |||||||| |||||||||||||||    
T  26706582 ataattccagtttttctagagatggtagtttaccaagtaacggaagccgcacaaatttcttgcaatccccaagttcaagagaaactaaattactaagaat 26706681  T
Q  319 a 319  Q
    |    
T  26706682 a 26706682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 30 - 203
Target Start/End: Complemental strand, 7582770 - 7582597
Alignment:
Q  30 caagtttagggcaatcaatgattgtcaaagtagaaagacaaggaaacatctcccctctttccactttcaataacccctctatgtttcgt-agacaagata 128  Q
    |||||||||||||||   ||||  ||||| |||||||||||||||||||||||  | ||||||||||||| |||||||||| |||| || || ||  | |    
T  7582770 caagtttagggcaattgttgatgttcaaaatagaaagacaaggaaacatctcctttttttccactttcaacaacccctctaagtttggtaagtcatca-a 7582672  T
Q  129 attggagtacctccagagatgggaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttca 203  Q
     |   |||||||| |||||||||||||  ||||| |||| |||||  | | ||||||||||||||||||||||||    
T  7582671 ttataagtacctcaagagatgggaaaattctcacttccaaaccattgtgaaattcatcatcatccaagtatttca 7582597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 203
Target Start/End: Original strand, 7098476 - 7098649
Alignment:
Q  30 caagtttagggcaatcaatgattgtcaaagtagaaagacaaggaaacatctcccctctttccactttcaataacccctctatgtttcgtagacaagataa 129  Q
    |||||||||||||||    ||||  |||| ||||||||||||||||| ||||  |||||||||||||||| |  ||||||| |||| | |  |    |||    
T  7098476 caagtttagggcaattgtcgatttccaaaatagaaagacaaggaaacgtctcatctctttccactttcaacagtccctctaagtttggcatcccgcgtaa 7098575  T
Q  130 ttggagtacctccagagatgggaaaaccctcacctccataccatcctcagattcatcatcatccaagtatttca 203  Q
       ||||  ||| ||||||||||||| ||| |||||||||||||  | | |||||| |||||||||||||||||    
T  7098576 caagagtgtctctagagatgggaaaatccttacctccataccattgtgaaattcattatcatccaagtatttca 7098649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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