View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20766_high_2 (Length: 385)
Name: NF20766_high_2
Description: NF20766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20766_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 376
Target Start/End: Complemental strand, 26949416 - 26949071
Alignment:
| Q |
18 |
atattgggcgtagaaaatctattcacctatttccatccaaaccctccttatatcctacaccatttctaaatttttccctaagacatggctaataccattc |
117 |
Q |
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| T |
26949416 |
atattgggcgtagaaaatctatccacctatttgcaaccaaaccctccttatatcctacaccatt-ctaaatttttccctaagacatggctaataccattc |
26949318 |
T |
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| Q |
118 |
aattgatcaaccatcatctatgactatccctactttcaatggtgaaaactatgttttttgcagcattaaaatgaagacannnnnnngatctcaagattta |
217 |
Q |
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| T |
26949317 |
aa--------ccatcatctatgattatctctactttcaatggtgaaaactatgatttttggagcattaaaatgaagatatatttttgctctcaagattta |
26949226 |
T |
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| Q |
218 |
tgggaaattgtagatgaaggatttactatttccgcagacatttcaactctcaatgcagctcagaaaaaggatcgagttgaaggaaaacaaacagaaagat |
317 |
Q |
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| T |
26949225 |
tgggaaattgtagatgaaggatttactatttccgcagacatttcaactctcaatgcagcttagaaaaag----gagttgaaggaaaataaacagaaagat |
26949130 |
T |
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| Q |
318 |
gcaaaggcattgttctttctgcaacaagcagtagcagacggtatctttccaagaataat |
376 |
Q |
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| T |
26949129 |
gcaaatgcattgttctttctgcaacaagcggtggcagacattatctttccaagaataat |
26949071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 70
Target Start/End: Complemental strand, 12841979 - 12841937
Alignment:
| Q |
28 |
tagaaaatctattcacctatttccatccaaaccctccttatat |
70 |
Q |
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| T |
12841979 |
tagaaaatctatccacctatttccaaccaaaccctccttatat |
12841937 |
T |
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