View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20766_low_1 (Length: 521)
Name: NF20766_low_1
Description: NF20766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20766_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 422; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Complemental strand, 27643552 - 27643059
Alignment:
| Q |
1 |
ccttttcgttatccaggaaacaaatacacttgggagcatttctgtgatatgacggatgcgggcatgcttgcaaaacaacatgtgtgggctgcagttacag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
27643552 |
ccttttcgttatccaggaaacaaatacacttgggagcatttctgtgatatgacggatgcgggcgtgcttgcaaaacaacatgtgtgggctgcagttacag |
27643453 |
T |
|
| Q |
101 |
aagatgtgaagaaccaagcgttcaattgcacaaatggtgatgttttcacttggaagagtatgtggatgttgcttagtgaggtttttgatgttaagtttgt |
200 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
27643452 |
aagatgcgaagaaccaagctttcaattgcacaaatggtgatgttttcacttggaagagtatgtggatgttgcttagtgaggtttttaatgttaagtttgt |
27643353 |
T |
|
| Q |
201 |
ggagttgaatgacaaggaagagtttgatttggcggagttaatgcgtgataagggtgagatttgggacttgattgtggaggaatatgggcttcataagacc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
27643352 |
ggagttgaatgacaaggaagagtttgatttggtggagttaatgcgtgataagggtgagatttgggacctgattgtggaggaatatgggcttcataagacc |
27643253 |
T |
|
| Q |
301 |
aaattggaggaaattgcttcctttgaagcaacactgccatttctgcggtttgagtttcaacatgtatctagtatgaacaagagtaagaactatgggttct |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||| |||||| | |||||||||| |
|
|
| T |
27643252 |
aaattggaggaaattgcttcctttgaagcaacggtgccagttctgcggtttcagtttcaacatgtatctagtatgaacaaaagtaaggattatgggttct |
27643153 |
T |
|
| Q |
401 |
ttgagtatgcagatacgtttaagagtatcagattctgggtggctaagctgagggagatgaaactcatatccttctaccaacgttgaattgcatt |
494 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||| ||| |||||||||||| |
|
|
| T |
27643152 |
ttgagtatgcagatacgtttaagagtatcagattctgggtggctaagttgagggagatgaaactcatacccgtctacaaacattgaattgcatt |
27643059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 4 - 481
Target Start/End: Original strand, 50247342 - 50247819
Alignment:
| Q |
4 |
tttcgttatccaggaaacaaatacacttgggagcatttctgtgatatgacggatgcgggcatgcttgcaaaacaacatgtgtgggctgcagttacagaag |
103 |
Q |
| |
|
||||| ||||||||||| | |||||||||||||||||| ||||||||| | ||||| || |||| ||||| |||||||||||||||| ||||||| | |
|
|
| T |
50247342 |
tttcggtatccaggaaatagatacacttgggagcatttttgtgatatgtcagatgcaggtgtgctggcaaagcaacatgtgtgggctggagttacaaaga |
50247441 |
T |
|
| Q |
104 |
atgtgaagaaccaagcgttcaattgcacaaatggtgatgttttcacttggaagagtatgtggatgttgcttagtgaggtttttgatgttaagtttgtgga |
203 |
Q |
| |
|
| | ||||||||||| || ||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
|
|
| T |
50247442 |
aagctaagaaccaagcatttaattgtacaaacggtgacattttcacttggaagagtatgtggatgttgcttagtgaggtttttgatgttgagtttgttga |
50247541 |
T |
|
| Q |
204 |
gttgaatgacaaggaagagtttgatttggcggagttaatgcgtgataagggtgagatttgggacttgattgtggaggaatatgggcttcataagaccaaa |
303 |
Q |
| |
|
|||| |||| || |||||||||||| | ||||| |||||||| ||||||||| |||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
50247542 |
gttggatgataaagaagagtttgatatcattgagttgatgcgtgacaagggtgaggtttgggacttgattgtagagaaatatgggcttcataagaccaag |
50247641 |
T |
|
| Q |
304 |
ttggaggaaattgcttcctttgaagcaacactgccatttctgcggtttgagtttcaacatgtatctagtatgaacaagagtaagaactatgggttctttg |
403 |
Q |
| |
|
||| |||||||||||| ||||||||| | ||||| || | ||||||||||||||||||||||||||||||||||||||||| | |||||||| || | |
|
|
| T |
50247642 |
ttgaaggaaattgcttgctttgaagccatggtgccagttgtacggtttgagtttcaacatgtatctagtatgaacaagagtaaagattatgggtttttag |
50247741 |
T |
|
| Q |
404 |
agtatgcagatacgtttaagagtatcagattctgggtggctaagctgagggagatgaaactcatatccttctaccaac |
481 |
Q |
| |
|
||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||| ||| |||||||| |
|
|
| T |
50247742 |
agtatgctgatacgtttaagagtatcaaactctgggtggctaagctgagggagatgaaacttataccctcctaccaac |
50247819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 4 - 487
Target Start/End: Original strand, 50254479 - 50254962
Alignment:
| Q |
4 |
tttcgttatccaggaaacaaatacacttgggagcatttctgtgatatgacggatgcgggcatgcttgcaaaacaacatgtgtgggctgcagttacagaag |
103 |
Q |
| |
|
||||||| ||||||||| | ||||||||||||||||||||||||||||||||||| | |||| ||||| |||||||| ||||||||||||||| | |
|
|
| T |
50254479 |
tttcgttttccaggaaataggtacacttgggagcatttctgtgatatgacggatgctcgtgtgctggcaaagcaacatgtatgggctgcagttacaaaga |
50254578 |
T |
|
| Q |
104 |
atgtgaagaaccaagcgttcaattgcacaaatggtgatgttttcacttggaagagtatgtggatgttgcttagtgaggtttttgatgttaagtttgtgga |
203 |
Q |
| |
|
| | |||||||||||||| ||||||||||||||||| |||||| | |||||||||||||||| | ||||| || || ||||| ||||||||||||||| |
|
|
| T |
50254579 |
aggctaagaaccaagcgtttaattgcacaaatggtgacgttttcgcatggaagagtatgtggaaggtgctttgtaagacttttgctgttaagtttgtgga |
50254678 |
T |
|
| Q |
204 |
gttgaatgacaaggaagagtttgatttggcggagttaatgcgtgataagggtgagatttgggacttgattgtggaggaatatgggcttcataagaccaaa |
303 |
Q |
| |
|
||| |||| ||||||||||||||||||| | |||| |||||||||||||||||| ||||||| |||||||||||| ||||| ||||||||||||||| |
|
|
| T |
50254679 |
tttggatgaaaaggaagagtttgatttggtgcagtttatgcgtgataagggtgaggtttgggatcagattgtggaggagtatggacttcataagaccaaa |
50254778 |
T |
|
| Q |
304 |
ttggaggaaattgcttcctttgaagcaacactgccatttctgcggtttgagtttcaacatgtatctagtatgaacaagagtaagaactatgggttctttg |
403 |
Q |
| |
|
|||||||||||||||| ||||| || ||||| || | || ||||||||||||| ||||||||||||||| |||||||| || |||| ||| |||| |
|
|
| T |
50254779 |
ttggaggaaattgcttgttttgatgccttggtgccagtttttcgatttgagtttcaacttgtatctagtatgaataagagtaaaaattatgagttttttg |
50254878 |
T |
|
| Q |
404 |
agtatgcagatacgtttaagagtatcagattctgggtggctaagctgagggagatgaaactcatatccttctaccaacgttgaa |
487 |
Q |
| |
|
||||||| || |||||||| ||| | | |||||||||| ||||||||||||||||| |||||| || ||||| ||| ||||| |
|
|
| T |
50254879 |
agtatgctgagacgtttaatagtgtgaaattctgggtgatgaagctgagggagatgaatctcatacccatctacgaacattgaa |
50254962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 431 - 516
Target Start/End: Complemental strand, 27646328 - 27646243
Alignment:
| Q |
431 |
gattctgggtggctaagctgagggagatgaaactcatatccttctaccaacgttgaattgcattatctgtaataatattcttcgac |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
27646328 |
gattctgggtggctaagctgagggagatgaaactcatacccttctaccaacattgaattgcattatctgtaataatattgttcgac |
27646243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University