View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20767_high_2 (Length: 341)
Name: NF20767_high_2
Description: NF20767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20767_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 46500288 - 46500627
Alignment:
| Q |
1 |
aacatatttaagggttaagtttaatcctcgattcttccctttttcatgtgaatttctaacnnnnnnn-tattattcccttcgttatat---tcattcatt |
96 |
Q |
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| T |
46500288 |
aacatatttaagggttaagtttaatcctcgattcttccctttttcatgtgaatttctaacaaaaaaaatattattcccttcgttatataattcattcatt |
46500387 |
T |
|
| Q |
97 |
gannnnnnnncctctgattttt---------------aactactttcctagctaaagg-tttgtgttgttcattcgaaattgtttcctcgtaactaggaa |
180 |
Q |
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|| |||||||||||| || |||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
46500388 |
gattttttttcctctgattttttttcctttttaaattaattactttccaagctaaaagatttgtgttgttcattcgaaattgtttcctcgtaactaggaa |
46500487 |
T |
|
| Q |
181 |
tgacaaaagagcacggaagggtcggttttaaacatcccc-cacccttgcatctttgtactgccccgaagccctgttgaaaatgattattgaacattcaca |
279 |
Q |
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|||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
46500488 |
tgacaacagagcacggaagggtccgttttaaacatccccccacccttgcatctttgtactgccccaaagccctattgaaaatgattattgaacattcaca |
46500587 |
T |
|
| Q |
280 |
cccctcccttaccaggggacgaagttcccagccccatccc |
319 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||| |
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| T |
46500588 |
cccctcccttaacaggggacgaagttcccagccccatccc |
46500627 |
T |
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