View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20767_high_7 (Length: 295)
Name: NF20767_high_7
Description: NF20767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20767_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 18 - 277
Target Start/End: Complemental strand, 43797769 - 43797522
Alignment:
| Q |
18 |
agaatcggaggtcatccccgttatcattactaagcaagcagcataacagtgatacacgaccatcgttctacatatatacaatgcattgcacaatatactc |
117 |
Q |
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| T |
43797769 |
agaatcggaggccatccccgttatcattactaagca----gcataacagtgatacacgaccatcgttctacata----caatgcattgcacaatatactc |
43797678 |
T |
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| Q |
118 |
tattgttttgaaagnnnnnnn-ctagttggtttccaatattgatacatgccaaatgacattatatttttcctttattattttgatgaatctggccttctc |
216 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
43797677 |
tattgttttgaaagaaaaaaaactagttggtttccaatattgatacatgccaaatgacatt-----tttcctttattattttgatgaatctggccttctc |
43797583 |
T |
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| Q |
217 |
ctttcttgttgttcctatttttgtaaggatatcaaacaacaataataattccctcctctct |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43797582 |
ctttcttgttgttcctatttttgtaaggatatcaaacaacaataataattccctcctctct |
43797522 |
T |
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