View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20767_high_9 (Length: 213)
Name: NF20767_high_9
Description: NF20767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20767_high_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 53499004 - 53498819
Alignment:
| Q |
16 |
aagaagtattctgaatgggaaatgaaaggcgtccctctaaggattgaaattaggccaatggatttagaaaataaacaggttatctatgttgtcctgttgt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53499004 |
aagaagtattctgaatgggaaatgaaaggcgtccctctaaggattgaaattaggccaatggatttagaaaataaacaggttatctatgttgtcctgttgt |
53498905 |
T |
|
| Q |
116 |
tgctcttatattctcacatgtcattttgcttctaccctgtatgttcaatgagacaccaaataaatcacttcaattttgcacaggtt |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53498904 |
tgctcttatattctcacatgtcattttgcttctaccctgtatgttcaatgagacaccaaataaatcacttcaattttgcacaggtt |
53498819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 53491408 - 53491223
Alignment:
| Q |
18 |
gaagtattctgaatgggaaatgaaaggcgtccctctaaggattgaaattaggccaatggatttagaaaataaacaggttatctatgttgtcctgttgttg |
117 |
Q |
| |
|
|||||||||||| |||||| ||||||| ||||||||||||||||||||| |||||| |||||||| |||||| |||||||||||||||||| |||||||| |
|
|
| T |
53491408 |
gaagtattctgattgggaattgaaaggtgtccctctaaggattgaaattgggccaaaggatttagtaaataagcaggttatctatgttgtcttgttgttg |
53491309 |
T |
|
| Q |
118 |
ctcttatattct--cacatgtcattttgcttctaccctgtatgttcaatgagacaccaaataaatcacttcaattttgcacaggtt |
201 |
Q |
| |
|
|||||||||||| || |||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
53491308 |
ctcttatattcttacatatgtcattttgcttctactgtttatgttcaatgagataccaaataaatcacttcaatttttcacaggtt |
53491223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 16070087 - 16069999
Alignment:
| Q |
19 |
aagtattctgaatgggaaatgaaaggcgtccctctaaggattgaaattaggccaatggatttagaaaataaacaggttatctatgttgt |
107 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||| | |||||||| ||| || || ||||| |||||| |||||||| ||||||| |
|
|
| T |
16070087 |
aagtattctgaatgggaaatgaaaggtgtccctttaatggttgaaattgggctaaagggtttaggaaataagcaggttattaatgttgt |
16069999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 53516516 - 53516478
Alignment:
| Q |
24 |
ttctgaatgggaaatgaaaggcgtccctctaaggattga |
62 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
53516516 |
ttctgaatgggaaatgaaaggtgtccctctaaggattga |
53516478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 45355367 - 45355440
Alignment:
| Q |
22 |
tattctgaatgggaaatgaaaggcgtccctctaaggattgaaattaggccaatggatttagaaaataaacaggt |
95 |
Q |
| |
|
|||||| | |||||||||||||| || ||||||||||||||||| |||| | |||||||| |||||| ||||| |
|
|
| T |
45355367 |
tattctcagtgggaaatgaaaggtgttcctctaaggattgaaatcgggcccaaggatttagcaaataagcaggt |
45355440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University