View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20767_low_5 (Length: 326)
Name: NF20767_low_5
Description: NF20767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20767_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 37 - 317
Target Start/End: Complemental strand, 29340823 - 29340544
Alignment:
| Q |
37 |
catataatgcttatgctgattatgcaaggcatttaagcaatattatataatgaggaagtgaa-tgagagcggggtcatgggaactgcactaaactacgga |
135 |
Q |
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||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
29340823 |
catataatgcttatgatgattatgcaaggcatttaaacaatattata--atgaggaagtgaagtgagagcggggtcatgggaactgcactaaactacgga |
29340726 |
T |
|
| Q |
136 |
aacatggacttgtctcttgctgccatgaccaaaaggaagagtctcgctttgtcacgtgccatgccatttctgtgatcatgtaaatggaaataaaataaaa |
235 |
Q |
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||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
29340725 |
aacatggacctgtctcttgctgccatgaccaaaaggaagagcctcgctttgtcacgtgccatgccatttctgtgatcatgtaaatggaaacgaaataaaa |
29340626 |
T |
|
| Q |
236 |
tacttcattaaacgtggcactaagataattatgtcctaaaagaagagtccgactcaaaagatttattgatgaattacacgaa |
317 |
Q |
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||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
29340625 |
tactttataacacgtggcactaagataattatgtcctaaaagaagagtccgactcaaaagatttattgatgaactacacgaa |
29340544 |
T |
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