View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20768_high_13 (Length: 357)
Name: NF20768_high_13
Description: NF20768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20768_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 17 - 347
Target Start/End: Complemental strand, 37602232 - 37601900
Alignment:
| Q |
17 |
atttaaaagttttccaaagatttttggaattcctttcaaggagaaagtaaaaataaaatgatatgcaatagtaaaaaacagaatcatgttcataatgaag |
116 |
Q |
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| T |
37602232 |
atttaaaagttttccaaagatttttggaattcctttcaaggagaaagtaaaaataaaatgatatgcaatagtaaaaaacagaatcatgttcatgatgaag |
37602133 |
T |
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| Q |
117 |
cagcaaaagacgctgtatatacagcactcattacatttatacttttataaagttggtatgaagtagcaaaagaaagcactagttcaataac--nnnnnnn |
214 |
Q |
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| T |
37602132 |
cagcaaaagacgctgtatatacagcactcattacatttatacttttataaagttggtatgaagtagcaaaagaaagcactagttcaataacaaaaaaaaa |
37602033 |
T |
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| Q |
215 |
nggcaagcatgagctcaaagaaaataacaccagataaattcttataagaaataggatgcataataatgacactattaaaacctctaagtacctctttaaa |
314 |
Q |
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| T |
37602032 |
aagcaagcatgagctcaaagaaaataacaccaggtaaattcttataagaaataggatgcataataatgacactattaaaacctctaagtacctctttaaa |
37601933 |
T |
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| Q |
315 |
tctaacaatattgggatgcttcaatgacctatg |
347 |
Q |
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| T |
37601932 |
tctaacaatattgggatgcttcaatgacctatg |
37601900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 347
Target Start/End: Complemental strand, 39410729 - 39410685
Alignment:
| Q |
303 |
tacctctttaaatctaacaatattgggatgcttcaatgacctatg |
347 |
Q |
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| T |
39410729 |
tacctctttaaatctaatgatattgggatgcttcaaggacctatg |
39410685 |
T |
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