View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20768_high_17 (Length: 304)
Name: NF20768_high_17
Description: NF20768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20768_high_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 38732282 - 38731985
Alignment:
| Q |
1 |
tttgaggagatatagggttcatataagttggacaaaatggataattcattgcttgtgtggcagcaacattattattgtttcctatccactgattattatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38732282 |
tttgaggagatatagggttcatataagttggacaaaatggataattcattgcttgtgtggcagcaacattattattgtttcctatccactgattattatt |
38732183 |
T |
|
| Q |
101 |
ctctatgttatgtgacagctgagatttcacttgcatcaattgtgcctgcaagcatgctacctgcataattaaaaagaaaacttagagaagaattgtacca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38732182 |
ctctatgttatgtgacagctgagatttcacttgcatcaattgtgcctgcaagcatgctacctgcataattaaaaagaaaacttagagaagaattgtacca |
38732083 |
T |
|
| Q |
201 |
atagaattcattaaggtgataactagaaaatttgtttatttattaataaattgactaatgaacatttaatatacatagtgacaataaataatattctt |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
38732082 |
atagaattcattaaggtgataactagaaaatttgtttgtttattaataaattgactaacgaagatttaatatacatagtgacaataaataatattctt |
38731985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University