View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20768_high_20 (Length: 276)
Name: NF20768_high_20
Description: NF20768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20768_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 35789527 - 35789261
Alignment:
| Q |
1 |
tatgaaccaaatgatgttgctctgggatgggaatcgaaccaacatggaaataaccnnnnnnncttttggaaacagtatgatgcttccattgaacatgctg |
100 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
35789527 |
tatgaaccaaatgatgttgctcggggatgggaatcgaaccaacatggaaataaccaaaaaaacttttggaaacagtatgatgctcccattgaacatgctg |
35789428 |
T |
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| Q |
101 |
caaaagaatatggatggaaaaatggtcagaatgattctcaaggatggaatcagagggagcaatatggtggtgactttcataacaagtatcaaggaagaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35789427 |
caaaagaatatggatggaaaaatggtcagaatgattctcaaggatggaatcagagggagcaatatggtggtgactttcataacaagtatcaaggaagaaa |
35789328 |
T |
|
| Q |
201 |
tagtggaaat---------tgggatggatataacacaaggagagaaaacaacatatcatggtctacg |
258 |
Q |
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|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
35789327 |
tagtggaaattgggggacatgggatggatataacagaaggagagaaaacaacatatcatggtctacg |
35789261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 3 - 214
Target Start/End: Complemental strand, 35799153 - 35798942
Alignment:
| Q |
3 |
tgaaccaaatgatgttgctctgggatgggaatcgaaccaacatggaaataaccnnnnnnncttttggaaacagtatgatgcttccattgaacatgctgca |
102 |
Q |
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|||||||||| ||| |||||||||||| ||||| |||||||||| |||||| ||| || |||||||| |||| || |||||||||||||| |
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| T |
35799153 |
tgaaccaaattatgctgctctgggatgcgaatcaaaccaacatgaaaataatgaaacaaacttatgtgaacagtatcatgcgcccgttgaacatgctgca |
35799054 |
T |
|
| Q |
103 |
aaagaatatggatggaaaaatggtcagaatgattctcaaggatggaatcagagggagcaatatggtggtgactttcataacaagtatcaaggaagaaata |
202 |
Q |
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|||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
35799053 |
aaagaacatggatggcaaaatggtcagaatgattctcagggatggaatcagagggagcgatatggtggtgactttcataacaagtatcaaggaagaaata |
35798954 |
T |
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| Q |
203 |
gtggaaattggg |
214 |
Q |
| |
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|||||||||||| |
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| T |
35798953 |
gtggaaattggg |
35798942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 101 - 201
Target Start/End: Complemental strand, 35760622 - 35760522
Alignment:
| Q |
101 |
caaaagaatatggatggaaaaatggtcagaatgattctcaaggatggaatcagagggagcaatatggtggtgactttcataacaagtatcaaggaagaaa |
200 |
Q |
| |
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||||||||||||| ||| |||||| || ||||||| ||| ||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||| |
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| T |
35760622 |
caaaagaatatggttggcgaaatggccaaaatgattatcatggatggaatcagacggagcaatatggtgctgacttgcataacaagtatcaaggaagaaa |
35760523 |
T |
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| Q |
201 |
t |
201 |
Q |
| |
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| |
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| T |
35760522 |
t |
35760522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 99 - 206
Target Start/End: Complemental strand, 35766104 - 35765997
Alignment:
| Q |
99 |
tgcaaaagaatatggatggaaaaatggtcagaatgattctcaaggatggaatcagagggagcaatatggtggtgactttcataacaagtatcaaggaaga |
198 |
Q |
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||||||||||||||||||||||||||| |||||| |||||||| | ||| ||||||||||| | |||||| |||| ||||||||||||||||||||| |
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| T |
35766104 |
tgcaaaagaatatggatggaaaaatgggcagaataattctcaaaggcggattcagagggagcgctttggtggcaacttgcataacaagtatcaaggaaga |
35766005 |
T |
|
| Q |
199 |
aatagtgg |
206 |
Q |
| |
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||| |||| |
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| T |
35766004 |
aatggtgg |
35765997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 99 - 201
Target Start/End: Complemental strand, 35785604 - 35785502
Alignment:
| Q |
99 |
tgcaaaagaatatggatggaaaaatggtcagaatgattctcaaggatggaatcagagggagcaatatggtggtgactttcataacaagtatcaaggaaga |
198 |
Q |
| |
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||||||||||||||| ||||||||| |||||||||||||||| | |||| |||||||||| | |||||||| |||| |||||||| |||||||||||| |
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| T |
35785604 |
tgcaaaagaatatgggtggaaaaatagtcagaatgattctcagaggtggattcagagggagaactatggtggcaacttgcataacaaatatcaaggaaga |
35785505 |
T |
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| Q |
199 |
aat |
201 |
Q |
| |
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||| |
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| T |
35785504 |
aat |
35785502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 99 - 188
Target Start/End: Complemental strand, 35755478 - 35755389
Alignment:
| Q |
99 |
tgcaaaagaatatggatggaaaaatggtcagaatgattctcaaggatggaatcagagggagcaatatggtggtgactttcataacaagta |
188 |
Q |
| |
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||||||| ||||||| ||| ||||| |||| ||||||||||| | |||| |||||||||||| |||||||||||||| ||||||||||| |
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| T |
35755478 |
tgcaaaacaatatggttggcaaaatagtcacaatgattctcagaggtggattcagagggagcactatggtggtgacttgcataacaagta |
35755389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 256
Target Start/End: Complemental strand, 35755348 - 35755303
Alignment:
| Q |
211 |
tgggatggatataacacaaggagagaaaacaacatatcatggtcta |
256 |
Q |
| |
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||||||||||||| || |||||||||||||||||| |||||||||| |
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| T |
35755348 |
tgggatggatatagcagaaggagagaaaacaacatgtcatggtcta |
35755303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 35760720 - 35760670
Alignment:
| Q |
3 |
tgaaccaaatgatgttgctctgggatgggaatcgaaccaacatggaaataa |
53 |
Q |
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|||||| ||| ||| ||||| ||||||||||||||||||||||| |||||| |
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| T |
35760720 |
tgaaccgaattatgctgctcagggatgggaatcgaaccaacatgaaaataa |
35760670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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