View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20768_high_28 (Length: 228)
Name: NF20768_high_28
Description: NF20768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20768_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 52556983 - 52557176
Alignment:
| Q |
19 |
acacgttcgttataaaataggatgtgaggaagagttaagctgcatcaacatagagtgatgaatattcattctcatcattttggaattatggctatnnnnn |
118 |
Q |
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| T |
52556983 |
acacgttcgttataaaataggatgtgaggaagagttaagctgcatcaacatagagtgatgaatattcattgtcatcattttggaattatggctatatcat |
52557082 |
T |
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| Q |
119 |
nnnnnnnnnnnnnnntggtaaccaataataatagcagcttgttctcagtctcagcaaggccacagattttggttacttcttctcttcctttcat |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52557083 |
catcatcatcatcattggtaaccaataataatagcagcttgttctcagtctcagcaaggccacagattttggttacttcttctcttcctttcat |
52557176 |
T |
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