View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20768_low_12 (Length: 363)
Name: NF20768_low_12
Description: NF20768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20768_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 351
Target Start/End: Complemental strand, 27422731 - 27422400
Alignment:
| Q |
18 |
aacaaacgcaacactatataggggaattcagcataaccaacacaccagcaaaagaattcaatatgctctttattttaaagactcgatatactcatctagt |
117 |
Q |
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| T |
27422731 |
aacaaacgcaacactatataggggaaatcagcataaccaacacaccagcaa--gaattcaatatgctctttattttaaagactcgatatactcatctagt |
27422634 |
T |
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| Q |
118 |
tttattgcataacataacacaatgttgtattttgataaagnnnnnnnggaagaatgaaattcaatacgttctttgcttaagaacttaaaatttcctcaag |
217 |
Q |
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| T |
27422633 |
tttattgcataacacaacacaatgttatattttgataaagaaaaaaaggaagaatgaaattcaatacgttctttgcttaagaacttaaaatttcctcaag |
27422534 |
T |
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| Q |
218 |
caaaatatttagcatgaatggtaggagacaaccattagatccaatttaagactcacagaaaccataaaatgcatatcaaaatcgcaaacttcatgctaaa |
317 |
Q |
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| T |
27422533 |
caaaatatttagcctgaatggtaggagacaaccaatatatccaattcaagactcacaaaaaccataaaatacatatcaaaatcgcaaacttcatgctaaa |
27422434 |
T |
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| Q |
318 |
taatagttcttttttataatcaagccaatagtat |
351 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
27422433 |
taatagttcttttttataatcaagccaatagtat |
27422400 |
T |
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