View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20768_low_15 (Length: 334)

Name: NF20768_low_15
Description: NF20768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20768_low_15
NF20768_low_15
[»] chr1 (11 HSPs)
chr1 (19-327)||(51762888-51763190)
chr1 (28-320)||(51858404-51858692)
chr1 (28-320)||(51854744-51855033)
chr1 (40-250)||(51756727-51756933)
chr1 (47-110)||(51782803-51782866)
chr1 (50-108)||(51407546-51407604)
chr1 (62-110)||(51832377-51832425)
chr1 (52-120)||(51381444-51381512)
chr1 (287-319)||(51829572-51829604)
chr1 (283-320)||(51221417-51221454)
chr1 (287-319)||(51832169-51832201)
[»] chr6 (4 HSPs)
chr6 (40-256)||(4182978-4183190)
chr6 (40-256)||(4743822-4744034)
chr6 (62-102)||(19119075-19119115)
chr6 (62-102)||(19126369-19126409)
[»] chr3 (6 HSPs)
chr3 (287-320)||(747352-747385)
chr3 (287-319)||(9608570-9608602)
chr3 (62-102)||(23197024-23197064)
chr3 (288-319)||(7334484-7334515)
chr3 (52-110)||(2492086-2492144)
chr3 (52-110)||(2631361-2631419)
[»] chr4 (1 HSPs)
chr4 (62-111)||(20016184-20016233)


Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 19 - 327
Target Start/End: Original strand, 51762888 - 51763190
Alignment:
Q  19 ggttaaggaataaaaaccacaatctcctatttgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaaaataagaa 118  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51762888 ggttaaggaataaaaaccacgatctcctatttgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaaaataagaa 51762987  T
Q  119 aagctggcactattagnnnnnnntgcgcaaacaatccctcaacacccccaaggtaattatgccatttccaggttggtaatcataatgagggtgagaaagc 218  Q
    |||||| |||||||||       ||| ||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||    
T  51762988 aagctgtcactattagaaaaaaatgcacaaacaatccctcaacaccc------taattatgccatttccaggttggtaatcataatgagggtgagaaagc 51763081  T
Q  219 tcttgatacaactcattctccaaagcaagagaaacaataacccaccaaaaaccatgatcactaaataacaaccaattaacagtgtcactcacaaatattc 318  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51763082 tcttgatacaactcattctccaaaccaagagaaacaataacccaccaaaaaccatgatcactaaataacaaccaattaacagtgtcactcacaaatattc 51763181  T
Q  319 cctttgctt 327  Q
    |||||||||    
T  51763182 cctttgctt 51763190  T

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Target: chr1; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 28 - 320
Target Start/End: Complemental strand, 51858692 - 51858404
Alignment:
Q  28 ataaaaaccacaatctcctatttgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaaaataagaaaagctggca 127  Q
    |||| |||||||| |||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| || ||||||  || ||    
T  51858692 ataacaaccacaacctcccatttgaggaacacttaacaatttagtccaagattctacatttccatattccttcatgatccaaacatcagaaaacttgtca 51858593  T
Q  128 ctattagnnnnnnntgcgcaaacaatccctcaacacccccaaggtaattatgccatttccaggttggtaatcataatgagggtgagaaagctcttgatac 227  Q
    |||| ||       ||| ||| |||||||||| ||||||||||| |||   || | ||||||||| ||||| |||| |||||||| ||||||||||| ||    
T  51858592 ctatgagaaaaaa-tgcacaagcaatccctcagcacccccaaggcaat---gcaagttccaggtttgtaattataaagagggtgaaaaagctcttgacac 51858497  T
Q  228 aactcattctccaaagcaagagaaacaataacccaccaaaaaccatgatcactaaataacaaccaattaacagtgtcactcacaaatattccc 320  Q
    ||||||||||||||| ||||||||||||| |||| |  ||||| | |||||  | ||| ||||||||||||||||||||||| | ||||||||    
T  51858496 aactcattctccaaatcaagagaaacaatgaccctcgcaaaactacgatcatgatataccaaccaattaacagtgtcactcaaagatattccc 51858404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 28 - 320
Target Start/End: Complemental strand, 51855033 - 51854744
Alignment:
Q  28 ataaaaaccacaatctcctatttgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaaaataagaaaagctggca 127  Q
    |||| |||||||  |||| ||||||||||||| |||||||||||||||||||| | ||||||||||||| ||||||||||||| || ||||||  |  ||    
T  51855033 ataacaaccacagcctcccatttgaggaacacataacaatttagtccaagattctacatttccatattctttcatgatccaaacatcagaaaacttctca 51854934  T
Q  128 ctattagnnnnnnntgcgcaaacaatccctcaacacccccaaggtaattatgccatttccaggttggtaatcataatgagggtgagaaagctcttgatac 227  Q
    ||| |||       ||| ||||||||||||||||||||||||||||||   || |||| |||||| ||| |||||| |||||||||||| ||||||||||    
T  51854933 ctactagaaaaag-tgcacaaacaatccctcaacacccccaaggtaat---gcgatttgcaggttcgtagtcataaagagggtgagaaaactcttgatac 51854838  T
Q  228 aactcattctccaaagcaagagaaacaataacccac-caaaaaccatgatcactaaataacaaccaattaacagtgtcactcacaaatattccc 320  Q
    ||| ||||||||||| ||||||||||||| |||| | ||||||| | |||||  | ||| |||||||||||| ||||| | |||||||||||||    
T  51854837 aacccattctccaaatcaagagaaacaatgaccctctcaaaaactaggatcatcatataccaaccaattaaccgtgtcgcacacaaatattccc 51854744  T

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Target: chr1; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 40 - 250
Target Start/End: Original strand, 51756727 - 51756933
Alignment:
Q  40 atctcctatttgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaaaataagaaaagctggcactattagnnnnn 139  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||  || |||| | ||         
T  51756727 atctcccatttgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaacatcaaaaaacttgtcactttgag-aaaa 51756825  T
Q  140 nntgcgcaaacaatccctcaacacccccaaggtaattatgccatttccaggttggtaatcataatgagggtgagaaagctcttgatacaactcattctcc 239  Q
      ||| |||||||||||||||||||||||||   || |||  |||| |  |||||| |||| || |||||||  ||||||||||| ||||||| ||||||    
T  51756826 aatgcacaaacaatccctcaacacccccaag---ataatgtaattttcttgttggttatcacaaagagggtgcaaaagctcttgagacaactccttctcc 51756922  T
Q  240 aaagcaagaga 250  Q
    ||| |||||||    
T  51756923 aaatcaagaga 51756933  T

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Target: chr1; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 47 - 110
Target Start/End: Complemental strand, 51782866 - 51782803
Alignment:
Q  47 atttgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaa 110  Q
    |||| |||||||||||| |||||| ||||||||||| ||||||||||||||||||| |||||||    
T  51782866 attttaggaacacttaataatttattccaagattgttcatttccatattccttcataatccaaa 51782803  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 51407546 - 51407604
Alignment:
Q  50 tgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatcca 108  Q
    ||||||||||||||||||||||||||||| ||| |||| |||||||||||||| |||||    
T  51407546 tgaggaacacttaacaatttagtccaagactgttcattcccatattccttcataatcca 51407604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 51832425 - 51832377
Alignment:
Q  62 aacaatttagtccaagattgtccatttccatattccttcatgatccaaa 110  Q
    ||||||||||||||||||||| ||||||||||||| ||||| |||||||    
T  51832425 aacaatttagtccaagattgttcatttccatattctttcattatccaaa 51832377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 51381444 - 51381512
Alignment:
Q  52 aggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaaaataagaaaa 120  Q
    ||||| ||| ||||||||||||||||| | | ||||||||||||| ||||| ||||||| || ||||||    
T  51381444 aggaatactgaacaatttagtccaagactcttcatttccatattctttcataatccaaatatcagaaaa 51381512  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 319
Target Start/End: Complemental strand, 51829604 - 51829572
Alignment:
Q  287 caaccaattaacagtgtcactcacaaatattcc 319  Q
    |||||||||||||||||||||||||||||||||    
T  51829604 caaccaattaacagtgtcactcacaaatattcc 51829572  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 320
Target Start/End: Original strand, 51221417 - 51221454
Alignment:
Q  283 ataacaaccaattaacagtgtcactcacaaatattccc 320  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  51221417 ataacaaccagttaaccgtgtcactcacaaatattccc 51221454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 319
Target Start/End: Complemental strand, 51832201 - 51832169
Alignment:
Q  287 caaccaattaacagtgtcactcacaaatattcc 319  Q
    |||||||||||||||||||||||||||| ||||    
T  51832201 caaccaattaacagtgtcactcacaaatgttcc 51832169  T

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Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 40 - 256
Target Start/End: Original strand, 4182978 - 4183190
Alignment:
Q  40 atctcctatttgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaaaataagaaaagctggcactattagnnnnn 139  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||  || |||||||||         
T  4182978 atctcccatttgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaacatcaaaaaacttgtcactattag-aaaa 4183076  T
Q  140 nntgcgcaaacaatccctcaacacccccaaggtaattatgccatttccaggttggtaatcataatgagggtgagaaagctcttgatacaactcattctcc 239  Q
      ||| ||||||||||||||||| ||||||||||    || || || ||| ||||  ||||||| ||||||||||||||||||||||  |||| |||| |    
T  4183077 aatgcacaaacaatccctcaacatccccaaggta---ttgtcagtttcagattggatatcataaagagggtgagaaagctcttgataagactccttctgc 4183173  T
Q  240 aaagcaagagaaacaat 256  Q
    |||  ||||||||||||    
T  4183174 aaatgaagagaaacaat 4183190  T

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Target: chr6; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 40 - 256
Target Start/End: Original strand, 4743822 - 4744034
Alignment:
Q  40 atctcctatttgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaaaataagaaaagctggcactattagnnnnn 139  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||  || |||||||||         
T  4743822 atctcccatttgaggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaacatcaaaaaacttgtcactattag-aaaa 4743920  T
Q  140 nntgcgcaaacaatccctcaacacccccaaggtaattatgccatttccaggttggtaatcataatgagggtgagaaagctcttgatacaactcattctcc 239  Q
      ||| ||||||||||||||||||||||||||||    ||  | || ||| ||||  ||||||| |||||||||||| |||||||||  |||| |||| |    
T  4743921 aatgcacaaacaatccctcaacacccccaaggta---ttgtaagtttcagattggatatcataaagagggtgagaaaactcttgataagactccttctgc 4744017  T
Q  240 aaagcaagagaaacaat 256  Q
    |||  ||||||||||||    
T  4744018 aaatgaagagaaacaat 4744034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 19119115 - 19119075
Alignment:
Q  62 aacaatttagtccaagattgtccatttccatattccttcat 102  Q
    ||||||||||||||||| | | |||||||||||||||||||    
T  19119115 aacaatttagtccaagactcttcatttccatattccttcat 19119075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 19126409 - 19126369
Alignment:
Q  62 aacaatttagtccaagattgtccatttccatattccttcat 102  Q
    ||||||||||||||||| | | |||||||||||||||||||    
T  19126409 aacaatttagtccaagactcttcatttccatattccttcat 19126369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 287 - 320
Target Start/End: Original strand, 747352 - 747385
Alignment:
Q  287 caaccaattaacagtgtcactcacaaatattccc 320  Q
    ||||||||||||||||||||||||||||||||||    
T  747352 caaccaattaacagtgtcactcacaaatattccc 747385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 319
Target Start/End: Original strand, 9608570 - 9608602
Alignment:
Q  287 caaccaattaacagtgtcactcacaaatattcc 319  Q
    |||||||||||||||||||||||||||||||||    
T  9608570 caaccaattaacagtgtcactcacaaatattcc 9608602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 23197064 - 23197024
Alignment:
Q  62 aacaatttagtccaagattgtccatttccatattccttcat 102  Q
    ||||||||||||||||||| | |||||||||||||||||||    
T  23197064 aacaatttagtccaagattcttcatttccatattccttcat 23197024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 288 - 319
Target Start/End: Original strand, 7334484 - 7334515
Alignment:
Q  288 aaccaattaacagtgtcactcacaaatattcc 319  Q
    ||||||||||||||||||||||||||||||||    
T  7334484 aaccaattaacagtgtcactcacaaatattcc 7334515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 110
Target Start/End: Complemental strand, 2492144 - 2492086
Alignment:
Q  52 aggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaa 110  Q
    |||||||||  |||||||||||||||| | || ||||||||| |||||||| |||||||    
T  2492144 aggaacactatacaatttagtccaagactctcgatttccatactccttcataatccaaa 2492086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 110
Target Start/End: Complemental strand, 2631419 - 2631361
Alignment:
Q  52 aggaacacttaacaatttagtccaagattgtccatttccatattccttcatgatccaaa 110  Q
    |||||||||  |||||||||||||||| | |  |||||||||||||||||| |||||||    
T  2631419 aggaacactgcacaatttagtccaagactcttgatttccatattccttcataatccaaa 2631361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 111
Target Start/End: Original strand, 20016184 - 20016233
Alignment:
Q  62 aacaatttagtccaagattgtccatttccatattccttcatgatccaaaa 111  Q
    ||||||||||||||||| | |  | |||||||||||||||||||||||||    
T  20016184 aacaatttagtccaagactcttgaattccatattccttcatgatccaaaa 20016233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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