View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20768_low_16 (Length: 311)

Name: NF20768_low_16
Description: NF20768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20768_low_16
NF20768_low_16
[»] chr6 (7 HSPs)
chr6 (96-220)||(14044493-14044617)
chr6 (235-311)||(13930401-13930477)
chr6 (14-94)||(14044249-14044329)
chr6 (14-92)||(13930070-13930147)
chr6 (259-300)||(14044622-14044663)
chr6 (235-285)||(13476292-13476342)
chr6 (116-173)||(13930348-13930405)


Alignment Details
Target: chr6 (Bit Score: 121; Significance: 5e-62; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 96 - 220
Target Start/End: Original strand, 14044493 - 14044617
Alignment:
Q  96 tatgatatatttttccatgaaatctgcaatgaatgagttcctaatcttctactaacagagtgtgaaaaaatgccaagtactaactccctccctaaagata 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14044493 tatgatatatttttccatgaaatctgcaatgaatgagttcctaatcttctactaacagagtgtgaaaaaatgcaaagtactaactccctccctaaagata 14044592  T
Q  196 ttattgccattctttctaaacagag 220  Q
    |||||||||||||||||||||||||    
T  14044593 ttattgccattctttctaaacagag 14044617  T

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Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 235 - 311
Target Start/End: Original strand, 13930401 - 13930477
Alignment:
Q  235 aaagttgcaaacagagtgcaaaacaaattctacattaacgatagattcttacatgttgtgttaagttttactctcat 311  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  13930401 aaagttgcaaacagagtgcaaaacaaattctacattaacgataggttcttacatgttgtgttaagttttactctcat 13930477  T

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Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 14044249 - 14044329
Alignment:
Q  14 gaaacagacggaggctacggcgccaccgcaaatagttcgtcacatagcggtggataacaagacagtctgtcacaaactaca 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  14044249 gaaacagacggaggctacggcgccaccgcaaatagttcgtcacatagatgtggataacaagacagtctgtcacaaactaca 14044329  T

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Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 13930070 - 13930147
Alignment:
Q  14 gaaacagacggaggctacggcgccaccgcaaatagttcgtcacatagcggtggataacaagacagtctgtcacaaacta 92  Q
    |||||||||||||||  |||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  13930070 gaaacagacggaggcggcggcgccaca-caaatagttcgtcacatagcggtggataataagacagtctgtcacaaacta 13930147  T

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Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 259 - 300
Target Start/End: Original strand, 14044622 - 14044663
Alignment:
Q  259 aaattctacattaacgatagattcttacatgttgtgttaagt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  14044622 aaattctacattaacgatagattcttacatgttgtgttaagt 14044663  T

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Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 235 - 285
Target Start/End: Complemental strand, 13476342 - 13476292
Alignment:
Q  235 aaagttgcaaacagagtgcaaaacaaattctacattaacgatagattctta 285  Q
    ||||||||| ||||||||| |||| ||||||||||||||||||||||||||    
T  13476342 aaagttgcagacagagtgcgaaaccaattctacattaacgatagattctta 13476292  T

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Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 173
Target Start/End: Original strand, 13930348 - 13930405
Alignment:
Q  116 aatctgcaatgaatgagttcctaatcttctactaacagagtgtgaaaaaatgccaagt 173  Q
    ||||||||||||||||| || |||||||| |||||||||| |||||||||||| ||||    
T  13930348 aatctgcaatgaatgagctcttaatcttccactaacagagagtgaaaaaatgcaaagt 13930405  T

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