View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20768_low_18 (Length: 290)
Name: NF20768_low_18
Description: NF20768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20768_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 20 - 288
Target Start/End: Complemental strand, 15908762 - 15908494
Alignment:
| Q |
20 |
ggtgtacgacaccaatacgtgtcagtcactatatacattttccatctgaagtgtcagtgctacataacacaattgtaaattgtttataactgattttaga |
119 |
Q |
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| T |
15908762 |
ggtgtccgacaccaatacgtgtcagtcactatatacgtcttccatctgaagtgtcagtgctacataacacaattgtaaattgtttataactgattttaga |
15908663 |
T |
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| Q |
120 |
gactaacaagtctaataggaaacaacaattgcaaaaataaatcccctttctgtttgtgcttaagagaattaatattatataattttgtgaagaaataatt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
15908662 |
gactaacaagtctaataggaaacaacaattgcaaaaataaatcccctttctgtttgtgcttaagagaattaatattatttaattttgtgaagaaataatt |
15908563 |
T |
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| Q |
220 |
tgaaaagtggatctaaatatccaaacactaaatattaatggaaaccctattctaagaatattttgacac |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
15908562 |
tgaaaagtggatctaaatatccaaacactaaatattaatggaaaccttattctaagaatattttgacac |
15908494 |
T |
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