View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20768_low_19 (Length: 283)
Name: NF20768_low_19
Description: NF20768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20768_low_19 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 4487525 - 4487789
Alignment:
| Q |
1 |
gtaaaccaaagagctgtgctgagctgaaactctgggttcggttctctctcgagataccaaacaactaacattgtgtaaatcaagattgcacctgtaacca |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4487525 |
gtaaaccaaagagctgtactgagctgaaactctgggttcggttctctctcgagataccaaacaactaacattgtgtaaatcaagattgcacctgtaacca |
4487624 |
T |
|
| Q |
101 |
gccacaattccaaggtaaatggcttcataaacatccatgctgactctccaggcttcatcggaactatcattgacaatcctgattctacatatggcactgt |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4487625 |
gccataattccaaggtaaatggcttcataaacatccatgctgactctccaggcttcatcggaactatcattgacaatcctgattctgcatatggcactgt |
4487724 |
T |
|
| Q |
201 |
aaaatccacatacggcaatctttcctctattatggtcatgtccccaacaacagcatcataagtct |
265 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4487725 |
aaaatccacatacggcaacctttcctctattatggtcatgtccccaacaacagcatcataagtct |
4487789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 25 - 265
Target Start/End: Original strand, 4482570 - 4482810
Alignment:
| Q |
25 |
tgaaactctgggttcggttctctctcgagataccaaacaactaacattgtgtaaatcaagattgcacctgtaaccagccacaattccaaggtaaatggct |
124 |
Q |
| |
|
|||||||||||||| ||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
4482570 |
tgaaactctgggttgggtactctctctagataccaaacaacacacattgtgtaaatcaagattgcacctgtacccagccacaattcccaggtaaatggct |
4482669 |
T |
|
| Q |
125 |
tcataaacatccatgctgactctccaggcttcatcggaactatcattgacaatcctgattctacatatggcactgtaaaatccacatacggcaatctttc |
224 |
Q |
| |
|
||||||||||||||||||| ||| | | ||||| ||||||||||| ||||||||||||||| ||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
4482670 |
tcataaacatccatgctgaatcttccgtcttcaatggaactatcatcgacaatcctgattctgcatatggcaatgtaaaatccacatacctcaatctttc |
4482769 |
T |
|
| Q |
225 |
ctctattatggtcatgtccccaacaacagcatcataagtct |
265 |
Q |
| |
|
||||||||||| | |||||||||||| ||| || ||||||| |
|
|
| T |
4482770 |
ctctattatggccgtgtccccaacaaaagcgtcgtaagtct |
4482810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 25 - 265
Target Start/End: Complemental strand, 34606591 - 34606351
Alignment:
| Q |
25 |
tgaaactctgggttcggttctctctcgagataccaaacaactaacattgtgtaaatcaagattgcacctgtaaccagccacaattccaaggtaaatggct |
124 |
Q |
| |
|
||||||||||| || ||| ||||| || ||||| || |||| |||||| ||||||||||| |||| || |||| ||||| || | |||| || |||| |
|
|
| T |
34606591 |
tgaaactctggattatcttccctctccaggtaccacactactaccattgtataaatcaagatgacaccagttaccacccacatttgccaggtgaagggct |
34606492 |
T |
|
| Q |
125 |
tcataaacatccatgctgactctccaggcttcatcggaactatcattgacaatcctgattctacatatggcactgtaaaatccacatacggcaatctttc |
224 |
Q |
| |
|
||||||||||||||||||| ||| ||| |||| || ||||||||| ||||||||||| ||| |||||||||| |||||||| ||||| ||||||| || |
|
|
| T |
34606491 |
tcataaacatccatgctgattcttcagacttctccgtaactatcatcgacaatcctgactctgcatatggcacagtaaaatctacatattgcaatctctc |
34606392 |
T |
|
| Q |
225 |
ctctattatggtcatgtccccaacaacagcatcataagtct |
265 |
Q |
| |
|
| | |||||||||||| ||||||||| | |||||||||| |
|
|
| T |
34606391 |
tgccagtatggtcatgtcgccaacaacaccgtcataagtct |
34606351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University