View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20768_low_2 (Length: 599)

Name: NF20768_low_2
Description: NF20768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20768_low_2
NF20768_low_2
[»] chr1 (5 HSPs)
chr1 (1-582)||(47567801-47568382)
chr1 (22-56)||(40179887-40179921)
chr1 (408-490)||(6525203-6525285)
chr1 (452-561)||(47584270-47584380)
chr1 (22-58)||(27542693-27542729)
[»] chr2 (1 HSPs)
chr2 (17-57)||(4931603-4931643)
[»] chr8 (1 HSPs)
chr8 (18-56)||(16850678-16850716)
[»] chr6 (1 HSPs)
chr6 (447-490)||(21968349-21968392)
[»] chr4 (1 HSPs)
chr4 (17-56)||(1048167-1048206)
[»] chr5 (2 HSPs)
chr5 (19-56)||(29037065-29037102)
chr5 (444-500)||(470148-470204)
[»] chr7 (1 HSPs)
chr7 (21-57)||(32910657-32910693)


Alignment Details
Target: chr1 (Bit Score: 570; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 1 - 582
Target Start/End: Original strand, 47567801 - 47568382
Alignment:
Q  1 cgtatatttaaaaacgtttgaatcaaatacatttgactttttgcttatatttaagattggcatgagtagtgaattaactaatggttcatcttactttaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47567801 cgtatatttaaaaacgtttgaatcaaatacatttgactttttgcttatatttaagattggcatgagtagtgaattaactaatggttcatcttactttaca 47567900  T
Q  101 gggtgtacataccaattgggatgagatgaagaggcatttgggaagctccaagcaaggtgcaaaagaattgaataatgaggttcttgttatagcttgactt 200  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47567901 gggtgtacataccaattgggatgagatgaagaggcttttgggaagctccaagcaaggtgcaaaagaattgaataatgaggttcttgttatagcttgactt 47568000  T
Q  201 cagcacgtaaatctagtgaaatgacaaggattttgtcttcatggacaagagtctggattactttttacttggttagtactttttactgtaattacagttc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47568001 cagcacgtaaatctagtgaaatgacaaggattttgtcttcatggacaagagtctggattactttttacttggttagtactttttactgtaattacagttc 47568100  T
Q  301 aactcttaagttaaatagacatatgttcttgcaagatgatgtatcttcgaatctgaaattgaaaactcactaaattcattcatttaccttcccttgaaga 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  47568101 aactcttaagttaaatagacatatgttcttgcaagatgatgtatcttcgaatctgaaattgaaaactcgctaaattcattcgtttaccttcccttgaaga 47568200  T
Q  401 tcctttgaagagaagacaattaaattggtacaaaaggcacaagattattggaggaattgctcgaggaattctttatctccatgaggattcacgccttaaa 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47568201 tcctttgaagagaagacaattaaattggtacaaaaggcacaagattattggaggaattgctcgaggaattctttatctccatgaggattcacgccttaaa 47568300  T
Q  501 attaacacagtgatctaaaacatagtaatgttttgttagatggtaacaaggaaccaaaaatctttgaattccttttttctcc 582  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47568301 attaacacagtgatctaaaacatagtaatgttttgttagatggtaacaaggaaccaaaaatctttgaattccttttttctcc 47568382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 56
Target Start/End: Original strand, 40179887 - 40179921
Alignment:
Q  22 atcaaatacatttgactttttgcttatatttaaga 56  Q
    |||||||||||||||||||||||||||||||||||    
T  40179887 atcaaatacatttgactttttgcttatatttaaga 40179921  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 408 - 490
Target Start/End: Original strand, 6525203 - 6525285
Alignment:
Q  408 aagagaagacaattaaattggtacaaaaggcacaagattattggaggaattgctcgaggaattctttatctccatgaggattc 490  Q
    ||||||| ||||||||| ||| ||| |||| | || || |||| ||| | |||||||||||||||||| || |||||||||||    
T  6525203 aagagaacacaattaaactggaacagaaggtataaaatcattgtaggtactgctcgaggaattctttaccttcatgaggattc 6525285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 452 - 561
Target Start/End: Original strand, 47584270 - 47584380
Alignment:
Q  452 aggaattgctcgaggaattctttatctccatgaggattcacgccttaaaatta-acacagtgatctaaaacatagtaatgttttgttagatggtaacaag 550  Q
    ||||||||| || ||||||||||| |||||||| ||||| ||||| ||||| | |||  ||||||| |||| ||| ||||| || |||||| |||||| |    
T  47584270 aggaattgcccgtggaattctttacctccatgaagattctcgcctcaaaataatacatcgtgatcttaaacctagcaatgtcttattagatagtaacatg 47584369  T
Q  551 gaaccaaaaat 561  Q
     | ||||||||    
T  47584370 aacccaaaaat 47584380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 27542693 - 27542729
Alignment:
Q  22 atcaaatacatttgactttttgcttatatttaagatt 58  Q
    |||||||||||||||||||||  ||||||||||||||    
T  27542693 atcaaatacatttgactttttatttatatttaagatt 27542729  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 4931603 - 4931643
Alignment:
Q  17 tttgaatcaaatacatttgactttttgcttatatttaagat 57  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  4931603 tttgaatcaaatacatttgactttttgtttatatttaagat 4931643  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 16850678 - 16850716
Alignment:
Q  18 ttgaatcaaatacatttgactttttgcttatatttaaga 56  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  16850678 ttgaaccaaatacatttgactttttgcttatatttaaga 16850716  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 447 - 490
Target Start/End: Complemental strand, 21968392 - 21968349
Alignment:
Q  447 attggaggaattgctcgaggaattctttatctccatgaggattc 490  Q
    |||||||||||||||||||||||||||||| | |||||| ||||    
T  21968392 attggaggaattgctcgaggaattctttatttgcatgagcattc 21968349  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 1048206 - 1048167
Alignment:
Q  17 tttgaatcaaatacatttgactttttgcttatatttaaga 56  Q
    |||||||||||| || ||||||||||||||||||||||||    
T  1048206 tttgaatcaaatgcaattgactttttgcttatatttaaga 1048167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 29037102 - 29037065
Alignment:
Q  19 tgaatcaaatacatttgactttttgcttatatttaaga 56  Q
    |||| |||||||||||||||||||||||||| ||||||    
T  29037102 tgaaccaaatacatttgactttttgcttatacttaaga 29037065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 444 - 500
Target Start/End: Complemental strand, 470204 - 470148
Alignment:
Q  444 attattggaggaattgctcgaggaattctttatctccatgaggattcacgccttaaa 500  Q
    ||||||||||||||||| ||||||||||||||  | |||||| ||||| | ||||||    
T  470204 attattggaggaattgcacgaggaattctttacttacatgagtattcaagacttaaa 470148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 32910657 - 32910693
Alignment:
Q  21 aatcaaatacatttgactttttgcttatatttaagat 57  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  32910657 aatcaaatatatttgactttttgattatatttaagat 32910693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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