View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20768_low_22 (Length: 268)
Name: NF20768_low_22
Description: NF20768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20768_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 15908416 - 15908166
Alignment:
| Q |
1 |
tcaagcca-atatagaaactgtactaacattttagccttttnnnnnnntaaaatagaaacagtactaatttcttgtttgagtaaatttgtcaaaacagag |
99 |
Q |
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| T |
15908416 |
tcaagccatatatagcaactgtactaacattttagccttttcaaaaaataaaatagaaacagtactagtttcttgtttgagtaaatttgtcaaaacagag |
15908317 |
T |
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| Q |
100 |
gaaactttactaaaccaaaaatagaagaagaagtagtcagagagaattttcttagaaaaaagttcaaaagtgtaaacaaaacatttccagaaactttgat |
199 |
Q |
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| T |
15908316 |
gaaactttactaaaccaaaaatagaagaagaactagtcagagagaattttctta-aaaaaagttcaaaagtgtaaacaaaacatttccagaaactttgat |
15908218 |
T |
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| Q |
200 |
gatgaatgaacattatatgcaggcatttatgtgtgtctgtcacaaaactagg |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15908217 |
gatgaatgaacattatatgcaggcatttatgtgtgtctgtcacaaaactagg |
15908166 |
T |
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