View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20768_low_23 (Length: 255)

Name: NF20768_low_23
Description: NF20768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20768_low_23
NF20768_low_23
[»] chr7 (2 HSPs)
chr7 (17-248)||(45238753-45238993)
chr7 (117-206)||(45231199-45231288)
[»] chr3 (2 HSPs)
chr3 (123-248)||(37463346-37463471)
chr3 (138-198)||(39428752-39428812)
[»] chr1 (3 HSPs)
chr1 (110-220)||(29424066-29424176)
chr1 (129-206)||(29467031-29467108)
chr1 (146-206)||(29452574-29452634)
[»] chr2 (8 HSPs)
chr2 (123-248)||(9316849-9316974)
chr2 (123-205)||(17565314-17565396)
chr2 (123-248)||(8572702-8572826)
chr2 (123-234)||(9060298-9060409)
chr2 (135-206)||(14551185-14551256)
chr2 (129-206)||(8578731-8578808)
chr2 (141-206)||(9283392-9283457)
chr2 (141-205)||(9275390-9275454)
[»] chr5 (1 HSPs)
chr5 (138-205)||(36225617-36225684)
[»] chr4 (1 HSPs)
chr4 (137-205)||(26575746-26575814)


Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 45238993 - 45238753
Alignment:
Q  17 cttctttcggaactgctcactgaattcctctccctcttacctctcccattccaatcaactacaaaatcaatgattctcaatgaacccctcccgccaatgc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45238993 cttctttcggaactgctcactgaattcctctccctcttacctctcccattccaatcaactacaaaatcaatgattctcaatgaacccctcccgccaatgc 45238894  T
Q  117 cgaatattccgtcggaattactcaccgaaatcctctccat---------gttaccagtacaatccctactccgattccgatcaacttcaaactcacttct 207  Q
    ||||||||||||||||||||||||||||||||||||||||         |||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  45238893 cgaatattccgtcggaattactcaccgaaatcctctccatgttatccatgttaccggtagaatccctactccgattccgatcaacttcaaactcacttct 45238794  T
Q  208 ttctttaatcgatagttacaacttcaccacccttcatctca 248  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  45238793 ttctttaatcgatagttacaacttcaccacccttcatctca 45238753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 206
Target Start/End: Complemental strand, 45231288 - 45231199
Alignment:
Q  117 cgaatattccgtcggaattactcaccgaaatcctctccatgttaccagtacaatccctactccgattccgatcaacttcaaactcacttc 206  Q
    |||||||||||||||| |||||||| || || ||||||||| |||| ||| ||||||| |||||||| ||||| || || || |||||||    
T  45231288 cgaatattccgtcggagttactcactgatattctctccatgctacctgtagaatccctcctccgatttcgatctacatcgaaatcacttc 45231199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 123 - 248
Target Start/End: Complemental strand, 37463471 - 37463346
Alignment:
Q  123 ttccgtcggaattactcaccgaaatcctctccatgttaccagtacaatccctactccgattccgatcaacttcaaactcacttctttctttaatcgatag 222  Q
    ||||| ||||| ||||| ||||||||||||||   ||||||||| |||| || ||||||||||||||||||||||| ||||||   ||||||||||||      
T  37463471 ttccgccggaaatactcgccgaaatcctctcccgtttaccagtagaatcacttctccgattccgatcaacttcaaaatcacttaaatctttaatcgattc 37463372  T
Q  223 ttacaacttcaccacccttcatctca 248  Q
    | ||||||||| || |||||||||||    
T  37463371 tcacaacttcatcaaccttcatctca 37463346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 39428812 - 39428752
Alignment:
Q  138 tcaccgaaatcctctccatgttaccagtacaatccctactccgattccgatcaacttcaaa 198  Q
    |||||||||||||||||   ||||| || |||||||| |||| ||||||||||||||||||    
T  39428812 tcaccgaaatcctctcccgcttaccggtgcaatccctcctccaattccgatcaacttcaaa 39428752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 220
Target Start/End: Complemental strand, 29424176 - 29424066
Alignment:
Q  110 ccaatgccgaatattccgtcggaattactcaccgaaatcctctccatgttaccagtacaatccctactccgattccgatcaacttcaaactcacttcttt 209  Q
    |||||| || || ||||| ||||  ||||||||| |||||||||  ||||||| ||||||||||| ||||||||||| ||||| ||||| |||||||  |    
T  29424176 ccaatgacggatcttccgccggagatactcaccggaatcctctctctgttaccggtacaatccctcctccgattccgttcaacctcaaaatcacttcaat 29424077  T
Q  210 ctttaatcgat 220  Q
    || ||||||||    
T  29424076 ctctaatcgat 29424066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 206
Target Start/End: Original strand, 29467031 - 29467108
Alignment:
Q  129 cggaattactcaccgaaatcctctccatgttaccagtacaatccctactccgattccgatcaacttcaaactcacttc 206  Q
    ||||| || |||||| |||| ||||  ||||||| ||||||||||| ||||||||||| ||||| ||||| |||||||    
T  29467031 cggaaataatcaccggaatcatctctctgttaccggtacaatccctcctccgattccgttcaacctcaaaatcacttc 29467108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 206
Target Start/End: Original strand, 29452574 - 29452634
Alignment:
Q  146 atcctctccatgttaccagtacaatccctactccgattccgatcaacttcaaactcacttc 206  Q
    ||||||||  ||||||| ||||||||||| ||||||||||| ||||| ||||| |||||||    
T  29452574 atcctctctctgttaccggtacaatccctcctccgattccgttcaacctcaaaatcacttc 29452634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 123 - 248
Target Start/End: Complemental strand, 9316974 - 9316849
Alignment:
Q  123 ttccgtcggaattactcaccgaaatcctctccatgttaccagtacaatccctactccgattccgatcaacttcaaactcacttctttctttaatcgatag 222  Q
    ||||| ||||| ||||| |||||||| |||||   ||||||||| |||| || ||||||||||||||||||||||| ||||||   |||||||| |||      
T  9316974 ttccgccggaaatactcgccgaaatcttctcccacttaccagtaaaatcacttctccgattccgatcaacttcaaaatcacttaaatctttaatagattc 9316875  T
Q  223 ttacaacttcaccacccttcatctca 248  Q
    | ||||||||| || |||||| ||||    
T  9316874 tcacaacttcatcaaccttcacctca 9316849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 123 - 205
Target Start/End: Original strand, 17565314 - 17565396
Alignment:
Q  123 ttccgtcggaattactcaccgaaatcctctccatgttaccagtacaatccctactccgattccgatcaacttcaaactcactt 205  Q
    |||| ||||||||| |||| |||||||||||    ||||||||||||||||| |||||| |||||||||| || || ||||||    
T  17565314 ttccatcggaattattcactgaaatcctctctcgcttaccagtacaatccctcctccgactccgatcaacgtcgaaatcactt 17565396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 248
Target Start/End: Original strand, 8572702 - 8572826
Alignment:
Q  123 ttccgtcggaattactcaccgaaatcctctccatgttaccagtacaatccctactccgattccgatcaacttcaaactcacttctttctttaatcgatag 222  Q
    ||||||||||| || |||| |||||| |||||    |||||||| |||| || ||||||||||||||||||||||| ||||||   ||| ||||||||      
T  8572702 ttccgtcggaaatagtcactgaaatcttctcccgcataccagta-aatcacttctccgattccgatcaacttcaaaatcacttaaatctataatcgattc 8572800  T
Q  223 ttacaacttcaccacccttcatctca 248  Q
      |||||||||||| |||||| ||||    
T  8572801 ccacaacttcaccaaccttcacctca 8572826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 234
Target Start/End: Original strand, 9060298 - 9060409
Alignment:
Q  123 ttccgtcggaattactcaccgaaatcctctccatgttaccagtacaatccctactccgattccgatcaacttcaaactcacttctttctttaatcgatag 222  Q
    ||||| ||||| ||||  |||||||| |||||   ||||| || ||||| || ||||||||||||||||||||||| ||||||   || |||||||||      
T  9060298 ttccgccggaaatacttgccgaaatcttctcccgcttaccggttcaatcacttctccgattccgatcaacttcaaaatcacttaaatccttaatcgattc 9060397  T
Q  223 ttacaacttcac 234  Q
    | ||||||||||    
T  9060398 tcacaacttcac 9060409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 206
Target Start/End: Complemental strand, 14551256 - 14551185
Alignment:
Q  135 tactcaccgaaatcctctccatgttaccagtacaatccctactccgattccgatcaacttcaaactcacttc 206  Q
    ||||||||  |||||||||  |||||||   ||||||||| |||| |||||||||||||||||| |||||||    
T  14551256 tactcaccagaatcctctctctgttaccgccacaatccctcctccaattccgatcaacttcaaaatcacttc 14551185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 206
Target Start/End: Original strand, 8578731 - 8578808
Alignment:
Q  129 cggaattactcaccgaaatcctctccatgttaccagtacaatccctactccgattccgatcaacttcaaactcacttc 206  Q
    |||||||  ||| ||| |||||||||   ||||| ||||||||||| |||||||||||||||| ||| || |||||||    
T  8578731 cggaattgttcatcgatatcctctcccgcttaccggtacaatcccttctccgattccgatcaatttctaaatcacttc 8578808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 206
Target Start/End: Original strand, 9283392 - 9283457
Alignment:
Q  141 ccgaaatcctctccatgttaccagtacaatccctactccgattccgatcaacttcaaactcacttc 206  Q
    |||||||| |||||   ||||||||  |||| ||||||||||||||||||||||| || |||||||    
T  9283392 ccgaaatcttctcctgcttaccagttaaatcactactccgattccgatcaacttctaaatcacttc 9283457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 205
Target Start/End: Complemental strand, 9275454 - 9275390
Alignment:
Q  141 ccgaaatcctctccatgttaccagtacaatccctactccgattccgatcaacttcaaactcactt 205  Q
    |||||||| |||||  ||||||||||||||| || ||| ||||||||||||  ||||| ||||||    
T  9275454 ccgaaatcttctcccggttaccagtacaatcacttctctgattccgatcaatctcaaaatcactt 9275390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 205
Target Start/End: Complemental strand, 36225684 - 36225617
Alignment:
Q  138 tcaccgaaatcctctccatgttaccagtacaatccctactccgattccgatcaacttcaaactcactt 205  Q
    |||||||||||||||||   |||| ||| |||||||| ||||||||||||||||||||||| ||||||    
T  36225684 tcaccgaaatcctctcccgcttactagtgcaatccctcctccgattccgatcaacttcaaaatcactt 36225617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 205
Target Start/End: Complemental strand, 26575814 - 26575746
Alignment:
Q  137 ctcaccgaaatcctctccatgttaccagtacaatccctactccgattccgatcaacttcaaactcactt 205  Q
    |||||||||||| |||||   ||||| |||  ||| || ||||||||||||||||||||||| ||||||    
T  26575814 ctcaccgaaatcttctcccgtttaccggtaatatcacttctccgattccgatcaacttcaaaatcactt 26575746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University