View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20768_low_29 (Length: 219)
Name: NF20768_low_29
Description: NF20768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20768_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 70 - 154
Target Start/End: Complemental strand, 14044853 - 14044769
Alignment:
| Q |
70 |
aaatgtatttgtctaacggaatttcagcacatgactgctggaattaaaatgtatttatgttcacatttcaataaaaatttatcta |
154 |
Q |
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| T |
14044853 |
aaatgtatttgtctaacgaaatttcagcacatgactgctggaattaaaatgtatttatgttcacatttcaataaaaatttatcta |
14044769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 61 - 140
Target Start/End: Complemental strand, 14020607 - 14020524
Alignment:
| Q |
61 |
gagctcaaaaaatgtatttgtctaacggaatttcagcacatgactgctgg----aattaaaatgtatttatgttcacatttcaa |
140 |
Q |
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| T |
14020607 |
gagctcaaaaaatgtatttgtctaacggaatttcagcacatgaccggtggaattaattaaaatgtatttatgttcacatttcaa |
14020524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 142 - 212
Target Start/End: Original strand, 13475630 - 13475700
Alignment:
| Q |
142 |
aaaaatttatctacgtttctttcaccaaaaagcttaagataattagtttatgacaattgacaatactgata |
212 |
Q |
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| T |
13475630 |
aaaaagttatatatgtttctttcacctaaaagcttaagatagttagtttataacaattgacaatactgata |
13475700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 212
Target Start/End: Complemental strand, 14020480 - 14020410
Alignment:
| Q |
142 |
aaaaatttatctacgtttctttcaccaaaaagcttaagataattagtttatgacaattgacaatactgata |
212 |
Q |
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| T |
14020480 |
aaaaattaatttatgtttctttcaccaaaaagcctaagatagttagtatttgataattgacaatactgata |
14020410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 14020702 - 14020649
Alignment:
| Q |
1 |
agctagttctccatcatccgtgttctaaaagaacacttagttcagttgtcatat |
54 |
Q |
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| T |
14020702 |
agctagttctccatcatccgtaacctaaaagaacacttagttcatttctcatat |
14020649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 96
Target Start/End: Original strand, 13475564 - 13475594
Alignment:
| Q |
66 |
caaaaaatgtatttgtctaacggaatttcag |
96 |
Q |
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| T |
13475564 |
caaaaaatgtatttgtctaacggaatttcag |
13475594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 125 - 154
Target Start/End: Complemental strand, 14044720 - 14044691
Alignment:
| Q |
125 |
tatgttcacatttcaataaaaatttatcta |
154 |
Q |
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| T |
14044720 |
tatgttcacatttcaataaaaatttatcta |
14044691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 10507760 - 10507812
Alignment:
| Q |
66 |
caaaaaatgtatttgtctaacggaatttcagcacatgactgctggaattaaaa |
118 |
Q |
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| T |
10507760 |
caaaaaatgtatttgtctatctgaatttcagcacatgacaggtggaattaaaa |
10507812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 216
Target Start/End: Original strand, 10507846 - 10507878
Alignment:
| Q |
184 |
ttagtttatgacaattgacaatactgatataga |
216 |
Q |
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| T |
10507846 |
ttagtttatgacaattgacaatactgatataga |
10507878 |
T |
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