View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20768_low_3 (Length: 582)
Name: NF20768_low_3
Description: NF20768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20768_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 528; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 18 - 574
Target Start/End: Original strand, 2515655 - 2516211
Alignment:
| Q |
18 |
aacgcattttttctcagcagattctagatctgtctgaagcttttctttttctttaatatacccttcttcaactaccttaaaccatctaacgcagttttta |
117 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2515655 |
aacgcattttttctcggcagattctagatctgtctgaagcttttctttttctttaatatacccttcttcaactaccttaaaccatctaacgcagttttta |
2515754 |
T |
|
| Q |
118 |
agtcgcttaataagatccaccatctgctccannnnnnnctgcaaatcaaaaatcaacccccatataagctttactaacaccaaaactcagtgatacagta |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2515755 |
agtcgcttaataagatccaccatctgctccatttttttctgcaaatcaaaaatcaacccccatataagctttactaacaccaaaactcagtgatacagta |
2515854 |
T |
|
| Q |
218 |
aaaatgagagaaagataccttagtatcaaggggattcccctttttcatcttctcagtcaataaagcttctacttcctctttggtgaattcaatgatgctt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2515855 |
aaaatgagagaaagataccttagtatcaaggggattcccctttttcatcttctcagtcaataaagcttctacttcctctttggtgaattcaatgatgctt |
2515954 |
T |
|
| Q |
318 |
ggctcagatccctcggttgcacccccaccggcaccatcattagcgtctgatctgttgttgagtgaacctaatggagccctacctctaccctgtacgacca |
417 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2515955 |
ggctcagatccctcggttgcaccgccaccggcaccatcattagcgtctgatctgttgttgagtgaacctaatggagccctacctctaccctgtacgacca |
2516054 |
T |
|
| Q |
418 |
ttctttcaccaccaatccttctacgcttattttcttcagcacctcccccttttttctgcatctaaaaatttaacaaattgaacactaattcgacactaat |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2516055 |
ttctttcaccaccaatccttctacgcttattttcttcagcacctcccccttttttctgcatctaaaaatttaacaaattgaacactaattcgacactaat |
2516154 |
T |
|
| Q |
518 |
ttcactattaatgcaaaacgagaactaatagtgtcaaaattgaaacctacttgagta |
574 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2516155 |
ttcactattaatgcaaaacgagaactaatagtgtcaaaattgaaacctacttgagta |
2516211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 148
Target Start/End: Complemental strand, 36577852 - 36577819
Alignment:
| Q |
115 |
ttaagtcgcttaataagatccaccatctgctcca |
148 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |
|
|
| T |
36577852 |
ttaagccgcttaataagatccaccatctgctcca |
36577819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University