View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20768_low_31 (Length: 208)
Name: NF20768_low_31
Description: NF20768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20768_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 4501091 - 4501266
Alignment:
| Q |
18 |
aaaactaactactacttaaaaattctaactaacttttacatgtttattagaaagttcttaccagttgaagctgattgtaaagggtttctaccagaatcgc |
117 |
Q |
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| T |
4501091 |
aaaactaactactacttacaaattctaactaacttttacatgtttattagaaagttcttaccagttgaagctgattgtaaagggtttctaccagaatcac |
4501190 |
T |
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| Q |
118 |
ggaagagtggggttatggtttgagtattggaataattattgaaactttgagctgcaatttgcatggctgttctctg |
193 |
Q |
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| T |
4501191 |
agaagagtagggttatggtttgagtattggaataattattgaaactttgagctgcaatttgcatggctgttctctg |
4501266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 40 - 193
Target Start/End: Original strand, 4495562 - 4495715
Alignment:
| Q |
40 |
ttctaactaacttttacatgtttattagaaagttcttaccagttgaagctgattgtaaagggtttctaccagaatcgcggaagagtggggttatggtttg |
139 |
Q |
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| T |
4495562 |
ttctaactatcttttacatttatattaaaaagtactgaccagttgaagctgcatgtaaagggtttctaccagagtcacggaagagtaggattatgttatg |
4495661 |
T |
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| Q |
140 |
agtattggaataattattgaaactttgagctgcaatttgcatggctgttctctg |
193 |
Q |
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| T |
4495662 |
attgtgggaataattattgaaactttgagctgcaatttgcattgctgttctctg |
4495715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 68 - 193
Target Start/End: Original strand, 4508374 - 4508499
Alignment:
| Q |
68 |
aaagttcttaccagttgaagctgattgtaaagggtttctaccagaatcgcggaagagtggggttatggtttgagtattggaataattattgaaactttga |
167 |
Q |
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| T |
4508374 |
aaagtactcaccagctgaagctgcttgtaaagggtttttaccagagtcacggaagaaaaggattatgttatgattgttggaataattattgaaactttga |
4508473 |
T |
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| Q |
168 |
gctgcaatttgcatggctgttctctg |
193 |
Q |
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| T |
4508474 |
gctgcaatttgcatagctgttttctg |
4508499 |
T |
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