View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20768_low_6 (Length: 463)
Name: NF20768_low_6
Description: NF20768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20768_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 16 - 446
Target Start/End: Original strand, 4775713 - 4776144
Alignment:
| Q |
16 |
atgataatctatggcaatatgcttcatcctagagtactgaaagacagggtttgcacatagagatgtagctccaatgttttctaagaatattgttggtgcc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
4775713 |
atgataatctatggcaatatgcttcatcctagagt---gaaagacagggtttgcacatagatatgtagctccaatgttgtcttagaatattgttggtgca |
4775809 |
T |
|
| Q |
116 |
gttaatggaatttgaagttcttgtaacaagttttgaacccatattaattcttgagtagtggctgctatagtacgatattcagcttcagttgacgattttg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4775810 |
gttaatggaatttgaagttcttgtaacaagttttgaacccatattaattcttgagtagtggctgctatagtacgatattcagcttcagttgacgattttg |
4775909 |
T |
|
| Q |
216 |
caattgttggttgcttcttgcatgaccaagagataatattagggccaatataaattaaataagcacctg----tttcctgtcaattgtgtctcctgccca |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
4775910 |
caattgttggttgcttcttgcatgaccaagagataatattagggccaaaataaattaaataagcacctgttgatttcctgtcaattgtgtctcctgccta |
4776009 |
T |
|
| Q |
312 |
atctgcatcacaaaagcttgtgaggcttgtatttgaagatcttgtgagatggagtccattggagatggtggatttgagatagcgcaatactctcttcaag |
411 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4776010 |
atctgcatcacaaaagcttgtgaggtttgtatttgaagatcttgtgagatggagtccattggagatggtggatttgagatagcgcaatactctcttcaag |
4776109 |
T |
|
| Q |
412 |
gcttgcatatctgtcacagtaggagcttgcatttg |
446 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
4776110 |
gcttgcatatctgtcacagtaggagcttgcatttg |
4776144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 341
Target Start/End: Original strand, 43061074 - 43061400
Alignment:
| Q |
16 |
atgataatctatggcaatatgcttcatcctagagtactgaaagacagggtttgcacatagagatgtagctccaatgttttctaagaatattgttggtgcc |
115 |
Q |
| |
|
|||||||||||||||||| || ||||||||| ||| |||| |||||||||||||||||| ||||||||| |||||| ||| ||||||| |||||||| |
|
|
| T |
43061074 |
atgataatctatggcaatgtgtttcatcctatagt---gaaaaacagggtttgcacatagatatgtagctctaatgttgtctgagaatatcgttggtgca |
43061170 |
T |
|
| Q |
116 |
gttaatggaatttgaagttcttgtaacaagttttgaacccatattaattcttgagtagtggctgctatagtacgatattcagcttcagttgacgattttg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
43061171 |
gttaatggaatttgaagttcttgtaacaagttttgaacccatattaattcctgagtagtggctgctatagtccgatattcagcttcagttgatgattttg |
43061270 |
T |
|
| Q |
216 |
caattgttggttgcttcttgcatgaccaagagataatattagggccaatataaattaaataagcacctgtt----tcctgtcaattgtgtctcctgccca |
311 |
Q |
| |
|
||| |||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
43061271 |
caactgttggctgcttcttgcatgaccaagagataatattagggccaaaataaatgaaataagcacctgttcatatcctgtcaattgtgtctcctgccca |
43061370 |
T |
|
| Q |
312 |
atctgcatcacaaaagcttgtgaggcttgt |
341 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |
|
|
| T |
43061371 |
atctgcatcacaaaagtttgtgaggcttgt |
43061400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 93
Target Start/End: Complemental strand, 45192914 - 45192874
Alignment:
| Q |
53 |
tgaaagacagggtttgcacatagagatgtagctccaatgtt |
93 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
45192914 |
tgaaggacagggtttgcacatagatatgtagctccaatgtt |
45192874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University