View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20768_low_9 (Length: 435)
Name: NF20768_low_9
Description: NF20768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20768_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 10 - 418
Target Start/End: Complemental strand, 25628755 - 25628348
Alignment:
| Q |
10 |
attattcttaaagttgaaataaaaaactccagcatcacgatctcgctaagtcgttacaataccaacacttgtgtacaattaagtattggtttttgagaga |
109 |
Q |
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| T |
25628755 |
attattcttaaagttgaaataaaaa-ctctagcatcacgatctcactaagtcgttacaataccaacacttgtgtacaattaagtattggtttttgagaga |
25628657 |
T |
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| Q |
110 |
tagaactaaatattattaataataataagaacacaattttatatgtgtcctccatgataatctttttgattaggagaaccccctccagccaccccagaac |
209 |
Q |
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| T |
25628656 |
tagaactaagtattattaataataataacaacacaattttatatgtgtcctccatgataatctttttgattaggagaaccccctccagccaccccagaac |
25628557 |
T |
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| Q |
210 |
cacctccaggggtcctatttgtttcagccctaggcatcctagctgtcatactaccaccatgctcgctaaaaccaccaggttttccaggtggttcgccagg |
309 |
Q |
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|||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
25628556 |
cacctccaggagtcctatctgtttcaaccctaggcatcctagctgtcatactaccaccatgctcgctaagaccaccaggttttccaggtggttcgccagg |
25628457 |
T |
|
| Q |
310 |
cccgactggtcctggttcgacaggctccccaggatctccaggttttccagggttaatagatccgctaggttctccaggtcctccgtaaccaccacctgga |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25628456 |
cccgactggtcctggttcgacaggctccccaggatctccaggttgtcccgggttgatagatccgctaggttctccaggtcctccgtaaccaccacctgga |
25628357 |
T |
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| Q |
410 |
gcactaggt |
418 |
Q |
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| T |
25628356 |
gcactaggt |
25628348 |
T |
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