View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20769_high_6 (Length: 233)
Name: NF20769_high_6
Description: NF20769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20769_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 41509659 - 41509852
Alignment:
| Q |
19 |
tcttgtactttcttccctttctgaaaaatttcctctcttttctttaactcttcctcagcctttatccttgcaagtttctcaatttcaagctcctcttgaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
41509659 |
tcttgtactttcttccctttctgaaaaatttcctctcttttctttaactcttcctcagcctttatccttgcaagtttctccatttcaagctcctcttgaa |
41509758 |
T |
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| Q |
119 |
gctttagtctctccatttcaacattctgctgcaagcgttggatttggtctctgagtccaacatctctactcaccaaaacaccttcaactctgtc |
212 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41509759 |
gctttagtctctccatatcaacattctgctgcaagcgttgagtttggtctctgagtccaacatctctactcaccaaaacaccttcaactctgtc |
41509852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 41519885 - 41520076
Alignment:
| Q |
19 |
tcttgtactttcttccctttctgaaaaatttcctctcttttctttaactcttcctcagcctttatccttgcaagtttctcaatttcaagctcctcttgaa |
118 |
Q |
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|||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||| |||| |||||||||||||||||| |||| |||||||||||||| |
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| T |
41519885 |
tcttgtactttcttccctttctgacaaagttcctctcttttcttaaactcttcctcggcctgtatccttgcaagtttctccattttaagctcctcttgaa |
41519984 |
T |
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| Q |
119 |
gctttagtctctccatttcaacattctgctgcaagcgttggatttggtctctgagtccaacatctctactcaccaaaacaccttcaactctgtc |
212 |
Q |
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| T |
41519985 |
gctttagtctctccatttcaacactctgctgcaagtgctgaatctgg--tctgagtccaacatctttactcaccaaaacaccttcaactctgtc |
41520076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 209
Target Start/End: Original strand, 41548210 - 41548388
Alignment:
| Q |
19 |
tcttgtactttcttccctttctgaaaaatttcctctcttttctttaactcttcctcagcctttatccttgcaagtttctcaatttcaagctcctcttgaa |
118 |
Q |
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||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||| || ||||| |
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| T |
41548210 |
tcttgtactttcttcattttctgacaaatttcctctcttttctttaactcttcctcagcctttaaccttgagagtttctccat------------ttgaa |
41548297 |
T |
|
| Q |
119 |
gctttagtctctccatttcaacattctgctgcaagcgttggatttggtctctgagtccaacatctctactcaccaaaacaccttcaactct |
209 |
Q |
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| | | |||| |||||||||||||||| || ||| |||| || |||||| ||||| | | ||| || ||||||||||||||||||||||| |
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| T |
41548298 |
gttgttgtctttccatttcaacattcttatgtaagtgttgaatctggtctttgagtgccaaatcccttctcaccaaaacaccttcaactct |
41548388 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 139
Target Start/End: Original strand, 41469921 - 41470041
Alignment:
| Q |
19 |
tcttgtactttcttccctttctgaaaaatttcctctcttttctttaactcttcctcagcctttatccttgcaagtttctcaatttcaagctcctcttgaa |
118 |
Q |
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|||| ||||||||| ||||||| | ||||||||||||||||||| ||||| |||||| | || ||||| |||| |||| | | || ||||||| || |
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| T |
41469921 |
tcttttactttcttacctttctcacaaatttcctctcttttcttaaactcagactcagcatatacccttgaaagtctctctaagtgaaactcctctctaa |
41470020 |
T |
|
| Q |
119 |
gctttagtctctccatttcaa |
139 |
Q |
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|||| |||||||||||||||| |
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| T |
41470021 |
gcttaagtctctccatttcaa |
41470041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 206
Target Start/End: Complemental strand, 39254222 - 39254179
Alignment:
| Q |
163 |
tggtctctgagtccaacatctctactcaccaaaacaccttcaac |
206 |
Q |
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|||| ||||||| |||||||||||||||||||||||||| |||| |
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| T |
39254222 |
tggtttctgagttcaacatctctactcaccaaaacacctccaac |
39254179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 139
Target Start/End: Complemental strand, 41702709 - 41702654
Alignment:
| Q |
84 |
ccttgcaagtttctcaatttcaagctcctcttgaagctttagtctctccatttcaa |
139 |
Q |
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||||| |||| |||| || ||||||| ||||| ||||||||||||||||||||||| |
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| T |
41702709 |
ccttgaaagtatctccatgtcaagctgctctttaagctttagtctctccatttcaa |
41702654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 48 - 139
Target Start/End: Complemental strand, 16638393 - 16638302
Alignment:
| Q |
48 |
ttcctctcttttctttaactcttcctcagcctttatccttgcaagtttctcaatttcaagctcctcttgaagctttagtctctccatttcaa |
139 |
Q |
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||||||||||||||| ||||||| |||||| | || ||||||||||||||| |||| ||||||| ||||||||||| ||||| |||||||| |
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| T |
16638393 |
ttcctctcttttcttaaactctttctcagcatgtaaccttgcaagtttctccatttgaagctccccttgaagcttttgtctcggcatttcaa |
16638302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 48 - 139
Target Start/End: Original strand, 17457245 - 17457336
Alignment:
| Q |
48 |
ttcctctcttttctttaactcttcctcagcctttatccttgcaagtttctcaatttcaagctcctcttgaagctttagtctctccatttcaa |
139 |
Q |
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||||||||||||||| ||||||| |||||| | || ||||||||||||||| |||| ||||||| ||||||||||| ||||| |||||||| |
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| T |
17457245 |
ttcctctcttttcttaaactctttctcagcatgtaaccttgcaagtttctccatttgaagctccccttgaagcttttgtctcggcatttcaa |
17457336 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 48 - 139
Target Start/End: Complemental strand, 17595969 - 17595878
Alignment:
| Q |
48 |
ttcctctcttttctttaactcttcctcagcctttatccttgcaagtttctcaatttcaagctcctcttgaagctttagtctctccatttcaa |
139 |
Q |
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||||||||||||||| ||||||| |||||| | || ||||||||||||||| |||| ||||||| ||||||||||| ||||| |||||||| |
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| T |
17595969 |
ttcctctcttttcttaaactctttctcagcatgtaaccttgcaagtttctccatttgaagctccccttgaagcttttgtctcggcatttcaa |
17595878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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