View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20769_low_1 (Length: 433)
Name: NF20769_low_1
Description: NF20769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20769_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 23 - 425
Target Start/End: Complemental strand, 37582860 - 37582459
Alignment:
| Q |
23 |
tttcagtttcatacggttgtgtccaaaacaaaatatttcagtctaatccaaataatgtgagtttacgtcctattctagtatacacagaattagttcaaaa |
122 |
Q |
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| T |
37582860 |
tttcagtttcatacggttgtgtccaaaacaaaatatttcagtctaatccaaatattgtgagtttacttcccattctagtatacacataattagttcaaaa |
37582761 |
T |
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| Q |
123 |
tctgttctgctnnnnnnnnngtatgaaatataaacaactttctgtttgttctttttcaaaaaatgaaatatgaacaaatgcaactaaaagcacctgattt |
222 |
Q |
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| T |
37582760 |
tctgttctgctaaaaaaaa-gtatgaaatataaacaactttctgtttgttctttttcaaaaaatgaaatatgaacaaatgcaactaaaagcacctgattt |
37582662 |
T |
|
| Q |
223 |
tctactaacaattatcttgccaagcctaaaaacacaagtcaggcacctatcacaatctaacctttaacactagagagcaaaaaatacagcatttggataa |
322 |
Q |
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| T |
37582661 |
tctactaacaattatcttgccaagcctaaaaacacaagtcaggcacctatcacaatctaacctttaacactagagagcaaaaaatacagcatttggataa |
37582562 |
T |
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| Q |
323 |
atgaagcagatggggtcaaagtaaataacacaacaagcagatgcagccataaaaaacaaatcattttccacatgacaaaccatgccccacaattgatatt |
422 |
Q |
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| T |
37582561 |
atgaagcagatggggtcaaagtaaataacacaacaagcagatgcagccataaaaaacaaatcattttccacatgacaaaccatgccccacaattgatatt |
37582462 |
T |
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| Q |
423 |
ctt |
425 |
Q |
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| T |
37582461 |
ctt |
37582459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 425
Target Start/End: Complemental strand, 37575824 - 37575703
Alignment:
| Q |
304 |
aaatacagcatttggataaatgaagcagatggggtcaaagtaaataacacaacaagcagatgcagccataaaaaacaaatcattttccacatgacaaacc |
403 |
Q |
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||||||||||| ||||| |||||||||| |||||| || ||| | |||||||||||||| || |||| | |||||| | | | ||||||||| || |
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| T |
37575824 |
aaatacagcatatggatcaatgaagcaggtggggttgaattaagcatcacaacaagcagatacaaccatcatcaacaaaccgatcttcacatgacagccc |
37575725 |
T |
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| Q |
404 |
atgccccacaattgatattctt |
425 |
Q |
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| T |
37575724 |
aagccccaccattgatattctt |
37575703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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