View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20769_low_2 (Length: 416)
Name: NF20769_low_2
Description: NF20769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20769_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 10 - 402
Target Start/End: Complemental strand, 32346603 - 32346211
Alignment:
| Q |
10 |
agatgaaactgtgagacacttgattcgtcataaactttatcatatgtttaataaatatcttggacatatgcttgtttaccaatatattagatgcnnnnnn |
109 |
Q |
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| T |
32346603 |
agatggaactgtgagacacttgattcgtcataaactctatcatatgtttaataaatatcttggacatatgcttgtttaccaatatgttagatgctttttt |
32346504 |
T |
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| Q |
110 |
ngtagtaccgaagattagagctacggataatgctttcattcactatgctttacagagctgattctttgacaagatgaatgcttctaaatttactttttct |
209 |
Q |
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| T |
32346503 |
tgtagtaccgaagattagagctacagataatgctttcattcactatgctttccagagctgattctttgacaagatgaatgcttctaaatttacttttcct |
32346404 |
T |
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| Q |
210 |
aactaattttgtatgctgactagaattgattatatagtgtcttttacttcttgttgtgttctactagctggataaagatgattattgacgttatctaatt |
309 |
Q |
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| T |
32346403 |
aactaattttgtatgctgactagaattgattatatagtgtcttttacttcttgttgtgttctactagctggataaagatgattattgacgttatctaatt |
32346304 |
T |
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| Q |
310 |
agtacttatgtcttacgcacttgaacacacatttcatagataaattgttcctttactttgttagaatcaaaacatcaattgcgaggtattgtt |
402 |
Q |
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| T |
32346303 |
agtacttaggtcttacgcacttgaacacacattttatagacaatttgttcctttactttgttagaatcaaaacatcaattgcgaggtattgtt |
32346211 |
T |
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