View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20769_low_3 (Length: 404)

Name: NF20769_low_3
Description: NF20769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20769_low_3
NF20769_low_3
[»] chr7 (4 HSPs)
chr7 (30-388)||(33782484-33782832)
chr7 (114-145)||(24339653-24339684)
chr7 (114-145)||(25481913-25481944)
chr7 (114-145)||(26033478-26033509)
[»] scaffold0044 (1 HSPs)
scaffold0044 (114-158)||(53178-53222)
[»] chr3 (12 HSPs)
chr3 (114-195)||(7928409-7928492)
chr3 (114-145)||(4987308-4987339)
chr3 (114-145)||(10954963-10954994)
chr3 (114-145)||(14979192-14979223)
chr3 (114-145)||(25948904-25948935)
chr3 (114-145)||(26508121-26508152)
chr3 (114-145)||(28918012-28918043)
chr3 (114-193)||(29508407-29508486)
chr3 (114-145)||(34910328-34910359)
chr3 (115-145)||(3164043-3164073)
chr3 (115-145)||(51206371-51206401)
chr3 (114-147)||(15314893-15314926)
[»] chr1 (9 HSPs)
chr1 (94-145)||(34298447-34298499)
chr1 (114-145)||(113310-113341)
chr1 (114-145)||(398782-398813)
chr1 (114-145)||(1486726-1486757)
chr1 (114-145)||(18337340-18337371)
chr1 (114-145)||(24577203-24577234)
chr1 (114-145)||(40258950-40258981)
chr1 (114-158)||(6612188-6612232)
chr1 (105-145)||(9103651-9103691)
[»] scaffold0361 (1 HSPs)
scaffold0361 (114-145)||(14541-14572)
[»] scaffold0223 (1 HSPs)
scaffold0223 (114-145)||(20183-20214)
[»] scaffold0103 (1 HSPs)
scaffold0103 (114-145)||(51822-51853)
[»] scaffold0027 (1 HSPs)
scaffold0027 (114-145)||(46693-46724)
[»] chr8 (4 HSPs)
chr8 (114-145)||(4948663-4948694)
chr8 (114-145)||(25566852-25566883)
chr8 (115-145)||(41831958-41831988)
chr8 (105-138)||(24858030-24858063)
[»] chr6 (8 HSPs)
chr6 (114-145)||(5970125-5970156)
chr6 (114-145)||(10770691-10770722)
chr6 (114-145)||(16388250-16388281)
chr6 (114-145)||(16766708-16766739)
chr6 (114-145)||(31384931-31384962)
chr6 (114-145)||(34595145-34595176)
chr6 (113-145)||(12627593-12627625)
chr6 (114-158)||(17341681-17341725)
[»] chr5 (8 HSPs)
chr5 (114-145)||(6247633-6247664)
chr5 (114-145)||(21191073-21191104)
chr5 (114-145)||(21576762-21576793)
chr5 (114-145)||(39698552-39698583)
chr5 (115-145)||(13287417-13287447)
chr5 (114-147)||(24273047-24273080)
chr5 (114-147)||(24389134-24389167)
chr5 (117-145)||(40000555-40000583)
[»] chr4 (6 HSPs)
chr4 (114-145)||(11596369-11596400)
chr4 (114-145)||(28964265-28964296)
chr4 (114-145)||(29205455-29205486)
chr4 (114-145)||(54580040-54580071)
chr4 (114-174)||(32910533-32910593)
chr4 (114-142)||(40179653-40179681)
[»] chr2 (4 HSPs)
chr2 (114-145)||(28677920-28677951)
chr2 (114-145)||(30404867-30404898)
chr2 (114-145)||(30717547-30717578)
chr2 (113-145)||(5473339-5473371)
[»] scaffold0021 (1 HSPs)
scaffold0021 (114-142)||(130496-130524)


Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 30 - 388
Target Start/End: Original strand, 33782484 - 33782832
Alignment:
Q  30 aattctcaagctaccgatgtttaggttgtttcctatgaagcacgtatactctttagactagacgtctcggtgtcggacacgtgtattacactgaattat- 128  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||     
T  33782484 aattctcaagctaccgatgtttaggttgtttcctatgaatcacgtatactctttagactagatgtctcggtgtcggacacgtgtattacactgaattatt 33782583  T
Q  129 gtgattttttcaaattaatgacggtatcggtatgtcgatgttcgtgtccgtaacggtacttcataggttgtttcactttatatatc-tttatttacagca 227  Q
    ||||||||||||||||||||||||||| |||||||||||||||||            |||| |||||||||||||||||||||||| |||||||||||||    
T  33782584 gtgattttttcaaattaatgacggtattggtatgtcgatgttcgt------------acttgataggttgtttcactttatatatcctttatttacagca 33782671  T
Q  228 attaaggcattttctcggctaatgttaatatttgtaagtggtgttgcctataaaactatgtaaagaagaacaacaaaacacatgtattcaacgatagaaa 327  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33782672 attaaggcattttgtcggctaatgttaatatttgtaagtggtgttgcctataaaactatgtaaagaagaacaacaaaacacatgtattcaacgatagaaa 33782771  T
Q  328 cgaaaaacaacataacacgtgtgcactttatagtttatgaaaagtgttcgtagcatttctt 388  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  33782772 cgaaaaacaacataacacgtgtgcactttgtagtttatgaaaagtgttcgtagcatttctt 33782832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 145
Target Start/End: Complemental strand, 24339684 - 24339653
Alignment:
Q  114 attacactgaattatgtgattttttcaaatta 145  Q
    ||||||||||||||||||||||||||||||||    
T  24339684 attacactgaattatgtgattttttcaaatta 24339653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 145
Target Start/End: Complemental strand, 25481944 - 25481913
Alignment:
Q  114 attacactgaattatgtgattttttcaaatta 145  Q
    ||||||||||||||||||||||||||||||||    
T  25481944 attacactgaattatgtgattttttcaaatta 25481913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 145
Target Start/End: Original strand, 26033478 - 26033509
Alignment:
Q  114 attacactgaattatgtgattttttcaaatta 145  Q
    ||||||||||||||||||||||||||||||||    
T  26033478 attacactgaattatgtgattttttcaaatta 26033509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 158
Target Start/End: Complemental strand, 53222 - 53178
Alignment:
Q  114 attacactgaattatgtgattttttcaaattaatgacggtatcgg 158  Q
    ||||||||||||||||||||||| |||||||| || |||||||||    
T  53222 attacactgaattatgtgattttctcaaattattggcggtatcgg 53178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 195
Target Start/End: Complemental strand, 7928492 - 7928409
Alignment:
Q  114 attacactgaattatgtgattttttcaaattaatgacggtatcggtatgtcg--atgttcgtgtccgtaacggtacttcatagg 195  Q
    |||||||||||||||||||||||||||||||| |  |||| ||||| | | |  |||| |||||||||| |||| |||||||||    
T  7928492 attacactgaattatgtgattttttcaaattattagcggtgtcggtgtcttgtcatgtccgtgtccgtatcggtgcttcatagg 7928409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 145
Target Start/End: Original strand, 4987308 - 4987339
Alignment:
Q  114 attacactgaattatgtgattttttcaaatta 145  Q
    ||||||||||||||||||||||||||||||||    
T  4987308 attacactgaattatgtgattttttcaaatta 4987339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 145
Target Start/End: Complemental strand, 10954994 - 10954963
Alignment:
Q  114 attacactgaattatgtgattttttcaaatta 145  Q
    ||||||||||||||||||||||||||||||||    
T  10954994 attacactgaattatgtgattttttcaaatta 10954963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 145
Target Start/End: Complemental strand, 14979223 - 14979192
Alignment:
Q  114 attacactgaattatgtgattttttcaaatta 145  Q
    ||||||||||||||||||||||||||||||||    
T  14979223 attacactgaattatgtgattttttcaaatta 14979192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 145
Target Start/End: Original strand, 25948904 - 25948935
Alignment:
Q  114 attacactgaattatgtgattttttcaaatta 145  Q
    ||||||||||||||||||||||||||||||||    
T  25948904 attacactgaattatgtgattttttcaaatta 25948935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 145
Target Start/End: Complemental strand, 26508152 - 26508121
Alignment:
Q  114 attacactgaattatgtgattttttcaaatta 145  Q
    ||||||||||||||||||||||||||||||||    
T  26508152 attacactgaattatgtgattttttcaaatta 26508121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 145
Target Start/End: Complemental strand, 28918043 - 28918012
Alignment:
Q  114 attacactgaattatgtgattttttcaaatta 145  Q
    ||||||||||||||||||||||||||||||||    
T  28918043 attacactgaattatgtgattttttcaaatta 28918012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 193
Target Start/End: Complemental strand, 29508486 - 29508407
Alignment:
Q  114 attacactgaattatgtgattttttcaaattaatgacggtatcggtatgtcgatgttcgtgtccgtaacggtacttcata 193  Q
    ||||||||||||||| |||||||||||||||| |   ||||||||| |||| |||| | |||| ||||| || |||||||    
T  29508486 attacactgaattatatgattttttcaaattattagtggtatcggtgtgtcaatgtccatgtctgtaacagtgcttcata 29508407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 145
Target Start/End: Complemental strand, 34910359 - 34910328
Alignment:
Q  114 attacactgaattatgtgattttttcaaatta 145  Q
    ||||||||||||||||||||||||||||||||    
T  34910359 attacactgaattatgtgattttttcaaatta 34910328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 145
Target Start/End: Original strand, 3164043 - 3164073
Alignment:
Q  115 ttacactgaattatgtgattttttcaaatta 145  Q
    |||||||||||||||||||||||||||||||    
T  3164043 ttacactgaattatgtgattttttcaaatta 3164073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 145
Target Start/End: Original strand, 51206371 - 51206401
Alignment:
Q  115 ttacactgaattatgtgattttttcaaatta 145  Q
    |||||||||||||||||||||||||||||||    
T  51206371 ttacactgaattatgtgattttttcaaatta 51206401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 147
Target Start/End: Original strand, 15314893 - 15314926
Alignment:
Q  114 attacactgaattatgtgattttttcaaattaat 147  Q
    |||||||| |||||||||||||||||||||||||    
T  15314893 attacactaaattatgtgattttttcaaattaat 15314926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 145
Target Start/End: Complemental strand, 34298499 - 34298447
Alignment:
Q  94 tctcggtgtcggacacgtgta-ttacactgaattatgtgattttttcaaatta 145  Q
    ||||||||||||| |||| || |||||||||||||||||||||| ||||||||    
T  34298499 tctcggtgtcggatacgtataattacactgaattatgtgattttctcaaatta 34298447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 145
Target Start/End: Complemental strand, 113341 - 113310
Alignment:
Q  114 attacactgaattatgtgattttttcaaatta 145  Q
    ||||||||||||||||||||||||||||||||    
T  113341 attacactgaattatgtgattttttcaaatta 113310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 145
Target Start/End: Original strand, 398782 - 398813
Alignment:
Q  114 attacactgaattatgtgattttttcaaatta 145  Q
    ||||||||||||||||||||||||||||||||    
T  398782 attacactgaattatgtgattttttcaaatta 398813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 145
Target Start/End: Original strand, 1486726 - 1486757
Alignment:
Q  114 attacactgaattatgtgattttttcaaatta 145  Q
    ||||||||||||||||||||||||||||||||    
T  1486726 attacactgaattatgtgattttttcaaatta 1486757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 145
Target Start/End: Complemental strand, 18337371 - 18337340
Alignment:
Q  114 attacactgaattatgtgattttttcaaatta 145  Q
    ||||||||||||||||||||||||||||||||    
T  18337371 attacactgaattatgtgattttttcaaatta 18337340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 145
Target Start/End: Original strand, 24577203 - 24577234
Alignment:
Q  114 attacactgaattatgtgattttttcaaatta 145  Q
    ||||||||||||||||||||||||||||||||    
T  24577203 attacactgaattatgtgattttttcaaatta 24577234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 145
Target Start/End: Original strand, 40258950 - 40258981
Alignment:
Q  114 attacactgaattatgtgattttttcaaatta 145  Q
    ||||||||||||||||||||||||||||||||    
T  40258950 attacactgaattatgtgattttttcaaatta 40258981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 158
Target Start/End: Original strand, 6612188 - 6612232
Alignment:
Q  114 attacactgaattatgtgattttttcaaattaatgacggtatcgg 158  Q
    ||||||||||||||||| |||||||||||||| | || |||||||    
T  6612188 attacactgaattatgtaattttttcaaattattaactgtatcgg 6612232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 145
Target Start/End: Complemental strand, 9103691 - 9103651
Alignment:
Q  105 gacacgtgtattacactgaattatgtgattttttcaaatta 145  Q
    ||||| ||||||| ||| |||||||||||||||||||||||    
T  9103691 gacacttgtattaaactaaattatgtgattttttcaaatta 9103651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 145
Target Start/End: Complemental strand, 14572 - 14541
Alignment:
Q  114 attacactgaattatgtgattttttcaaatta 145  Q
    ||||||||||||||||||||||||||||||||    
T  14572 attacactgaattatgtgattttttcaaatta 14541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 145
Target Start/End: Complemental strand, 20214 - 20183
Alignment:
Q  114 attacactgaattatgtgattttttcaaatta 145  Q
    ||||||||||||||||||||||||||||||||    
T  20214 attacactgaattatgtgattttttcaaatta 20183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 145
Target Start/End: Complemental strand, 51853 - 51822
Alignment:
Q  114 attacactgaattatgtgattttttcaaatta 145  Q
    ||||||||||||||||||||||||||||||||    
T  51853 attacactgaattatgtgattttttcaaatta 51822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 145
Target Start/End: Complemental strand, 46724 - 46693
Alignment:
Q  114 attacactgaattatgtgattttttcaaatta 145  Q
    ||||||||||||||||||||||||||||||||    
T  46724 attacactgaattatgtgattttttcaaatta 46693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 145
Target Start/End: Complemental strand, 4948694 - 4948663
Alignment:
Q  114 attacactgaattatgtgattttttcaaatta 145  Q
    ||||||||||||||||||||||||||||||||    
T  4948694 attacactgaattatgtgattttttcaaatta 4948663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 145
Target Start/End: Complemental strand, 25566883 - 25566852
Alignment:
Q  114 attacactgaattatgtgattttttcaaatta 145  Q
    ||||||||||||||||||||||||||||||||    
T  25566883 attacactgaattatgtgattttttcaaatta 25566852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 145
Target Start/End: Original strand, 41831958 - 41831988
Alignment:
Q  115 ttacactgaattatgtgattttttcaaatta 145  Q
    |||||||||||||||||||||||||||||||    
T  41831958 ttacactgaattatgtgattttttcaaatta 41831988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 138
Target Start/End: Complemental strand, 24858063 - 24858030
Alignment:
Q  105 gacacgtgtattacactgaattatgtgatttttt 138  Q
    ||||| ||||||||||||||||||||||||||||    
T  24858063 gacacttgtattacactgaattatgtgatttttt 24858030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 145
Target Start/End: Original strand, 5970125 - 5970156
Alignment:
Q  114 attacactgaattatgtgattttttcaaatta 145  Q
    ||||||||||||||||||||||||||||||||    
T  5970125 attacactgaattatgtgattttttcaaatta 5970156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 145
Target Start/End: Original strand, 10770691 - 10770722
Alignment:
Q  114 attacactgaattatgtgattttttcaaatta 145  Q
    ||||||||||||||||||||||||||||||||    
T  10770691 attacactgaattatgtgattttttcaaatta 10770722  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 145
Target Start/End: Original strand, 16388250 - 16388281
Alignment:
Q  114 attacactgaattatgtgattttttcaaatta 145  Q
    ||||||||||||||||||||||||||||||||    
T  16388250 attacactgaattatgtgattttttcaaatta 16388281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 145
Target Start/End: Complemental strand, 16766739 - 16766708
Alignment:
Q  114 attacactgaattatgtgattttttcaaatta 145  Q
    ||||||||||||||||||||||||||||||||    
T  16766739 attacactgaattatgtgattttttcaaatta 16766708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 145
Target Start/End: Complemental strand, 31384962 - 31384931
Alignment:
Q  114 attacactgaattatgtgattttttcaaatta 145  Q
    ||||||||||||||||||||||||||||||||    
T  31384962 attacactgaattatgtgattttttcaaatta 31384931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 145
Target Start/End: Complemental strand, 34595176 - 34595145
Alignment:
Q  114 attacactgaattatgtgattttttcaaatta 145  Q
    ||||||||||||||||||||||||||||||||    
T  34595176 attacactgaattatgtgattttttcaaatta 34595145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 145
Target Start/End: Original strand, 12627593 - 12627625
Alignment:
Q  113 tattacactgaattatgtgattttttcaaatta 145  Q
    |||||||||||||||||||||||||||| ||||    
T  12627593 tattacactgaattatgtgattttttcacatta 12627625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 158
Target Start/End: Original strand, 17341681 - 17341725
Alignment:
Q  114 attacactgaattatgtgattttttcaaattaatgacggtatcgg 158  Q
    ||||||||||||||||||||||| |||||||| | ||||| ||||    
T  17341681 attacactgaattatgtgattttatcaaattattaacggtgtcgg 17341725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 145
Target Start/End: Complemental strand, 6247664 - 6247633
Alignment:
Q  114 attacactgaattatgtgattttttcaaatta 145  Q
    ||||||||||||||||||||||||||||||||    
T  6247664 attacactgaattatgtgattttttcaaatta 6247633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 145
Target Start/End: Original strand, 21191073 - 21191104
Alignment:
Q  114 attacactgaattatgtgattttttcaaatta 145  Q
    ||||||||||||||||||||||||||||||||    
T  21191073 attacactgaattatgtgattttttcaaatta 21191104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 145
Target Start/End: Original strand, 21576762 - 21576793
Alignment:
Q  114 attacactgaattatgtgattttttcaaatta 145  Q
    ||||||||||||||||||||||||||||||||    
T  21576762 attacactgaattatgtgattttttcaaatta 21576793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 145
Target Start/End: Complemental strand, 39698583 - 39698552
Alignment:
Q  114 attacactgaattatgtgattttttcaaatta 145  Q
    ||||||||||||||||||||||||||||||||    
T  39698583 attacactgaattatgtgattttttcaaatta 39698552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 145
Target Start/End: Original strand, 13287417 - 13287447
Alignment:
Q  115 ttacactgaattatgtgattttttcaaatta 145  Q
    |||||||||||||||||||||||||||||||    
T  13287417 ttacactgaattatgtgattttttcaaatta 13287447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 147
Target Start/End: Original strand, 24273047 - 24273080
Alignment:
Q  114 attacactgaattatgtgattttttcaaattaat 147  Q
    ||||||||||||||||||||||| ||||||||||    
T  24273047 attacactgaattatgtgattttctcaaattaat 24273080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 147
Target Start/End: Complemental strand, 24389167 - 24389134
Alignment:
Q  114 attacactgaattatgtgattttttcaaattaat 147  Q
    ||||||||||||||||||||||| ||||||||||    
T  24389167 attacactgaattatgtgattttctcaaattaat 24389134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 145
Target Start/End: Original strand, 40000555 - 40000583
Alignment:
Q  117 acactgaattatgtgattttttcaaatta 145  Q
    |||||||||||||||||||||||||||||    
T  40000555 acactgaattatgtgattttttcaaatta 40000583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 145
Target Start/End: Original strand, 11596369 - 11596400
Alignment:
Q  114 attacactgaattatgtgattttttcaaatta 145  Q
    ||||||||||||||||||||||||||||||||    
T  11596369 attacactgaattatgtgattttttcaaatta 11596400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 145
Target Start/End: Original strand, 28964265 - 28964296
Alignment:
Q  114 attacactgaattatgtgattttttcaaatta 145  Q
    ||||||||||||||||||||||||||||||||    
T  28964265 attacactgaattatgtgattttttcaaatta 28964296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 145
Target Start/End: Complemental strand, 29205486 - 29205455
Alignment:
Q  114 attacactgaattatgtgattttttcaaatta 145  Q
    ||||||||||||||||||||||||||||||||    
T  29205486 attacactgaattatgtgattttttcaaatta 29205455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 145
Target Start/End: Original strand, 54580040 - 54580071
Alignment:
Q  114 attacactgaattatgtgattttttcaaatta 145  Q
    ||||||||||||||||||||||||||||||||    
T  54580040 attacactgaattatgtgattttttcaaatta 54580071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 174
Target Start/End: Complemental strand, 32910593 - 32910533
Alignment:
Q  114 attacactgaattatgtgattttttcaaattaatgacggtatcggtatgtcgatgttcgtg 174  Q
    ||||||||||||||||| ||||| |||||||| |  | || ||||||||||| ||||||||    
T  32910593 attacactgaattatgtcattttctcaaattattatccgtgtcggtatgtcggtgttcgtg 32910533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 142
Target Start/End: Original strand, 40179653 - 40179681
Alignment:
Q  114 attacactgaattatgtgattttttcaaa 142  Q
    |||||||||||||||||||||||||||||    
T  40179653 attacactgaattatgtgattttttcaaa 40179681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 145
Target Start/End: Complemental strand, 28677951 - 28677920
Alignment:
Q  114 attacactgaattatgtgattttttcaaatta 145  Q
    ||||||||||||||||||||||||||||||||    
T  28677951 attacactgaattatgtgattttttcaaatta 28677920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 145
Target Start/End: Original strand, 30404867 - 30404898
Alignment:
Q  114 attacactgaattatgtgattttttcaaatta 145  Q
    ||||||||||||||||||||||||||||||||    
T  30404867 attacactgaattatgtgattttttcaaatta 30404898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 145
Target Start/End: Original strand, 30717547 - 30717578
Alignment:
Q  114 attacactgaattatgtgattttttcaaatta 145  Q
    ||||||||||||||||||||||||||||||||    
T  30717547 attacactgaattatgtgattttttcaaatta 30717578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 145
Target Start/End: Complemental strand, 5473371 - 5473339
Alignment:
Q  113 tattacactgaattatgtgattttttcaaatta 145  Q
    |||||||| ||||||||||||||||||||||||    
T  5473371 tattacaccgaattatgtgattttttcaaatta 5473339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 142
Target Start/End: Complemental strand, 130524 - 130496
Alignment:
Q  114 attacactgaattatgtgattttttcaaa 142  Q
    |||||||||||||||||||||||||||||    
T  130524 attacactgaattatgtgattttttcaaa 130496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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