View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20769_low_5 (Length: 341)
Name: NF20769_low_5
Description: NF20769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20769_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 13 - 322
Target Start/End: Complemental strand, 29607663 - 29607354
Alignment:
| Q |
13 |
aatattatgagtataattgttcatcattcaattccatacatatgaaataattttatatttttgcaaaccaaataaccgtttcgctcgaatccatgttttg |
112 |
Q |
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| T |
29607663 |
aatattatgagtataattgttcatcattcaattccatacatatgaaataattttatatttttgcaaaccaaataaccgtttcgcttgaatccatgttttg |
29607564 |
T |
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| Q |
113 |
tcatatgagcatcttctgcagttactcaagtgacacataacaaaatggcaatagcaattccaccagttgccaacatctttctccattgcccttggtaaga |
212 |
Q |
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| T |
29607563 |
tcatatgagcatcttctgcagttactcaagtgacacataacaaaatggcaatagcaattccaccagttgccaacatctttctccattgcccttggtaaga |
29607464 |
T |
|
| Q |
213 |
ttgtgcaccattctgtgaaacataaaatcataagattcgataaaagaagctttagcaagttttgccaagtcagagtacaatctgtctgataaagatcaga |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29607463 |
ttgtgcaccattctgtgaaacataaaatcataagattcgataaaagaagctttagcaagttttgccaagtcagagtacaatctgtctgataaagatcaga |
29607364 |
T |
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| Q |
313 |
tgacaaagat |
322 |
Q |
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|||||||||| |
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| T |
29607363 |
tgacaaagat |
29607354 |
T |
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